BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001474-TA|BGIBMGA001474-PA|IPR013025|Ribosomal protein L25/L23, IPR012678|Ribosomal L23 and L15e, core (150 letters) Database: fruitfly 52,641 sequences; 24,830,863 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY071415-1|AAL49037.1| 150|Drosophila melanogaster RE49852p pro... 224 3e-59 AE014296-445|AAF47639.1| 150|Drosophila melanogaster CG1320-PA ... 224 3e-59 BT001596-1|AAN71351.1| 540|Drosophila melanogaster RE28470p pro... 30 1.1 AE014296-2821|AAN11713.1| 540|Drosophila melanogaster CG32170-P... 30 1.1 M20231-1|AAA28720.1| 1135|Drosophila melanogaster protein ( D.me... 29 3.5 M20230-1|AAA28721.1| 1501|Drosophila melanogaster protein ( D.me... 29 3.5 J03131-2|AAA28719.1| 1135|Drosophila melanogaster protein ( D.me... 29 3.5 J03131-1|AAA28718.1| 1501|Drosophila melanogaster protein ( D.me... 29 3.5 AY119496-1|AAM50150.1| 1135|Drosophila melanogaster GH10824p pro... 29 3.5 AE014134-1264|AAF52505.1| 1135|Drosophila melanogaster CG5125-PA... 29 3.5 AE014134-1263|AAF52504.3| 1501|Drosophila melanogaster CG5125-PB... 29 3.5 AE013599-3144|AAM70856.1| 980|Drosophila melanogaster CG30389-P... 29 3.5 AE013599-3143|AAF46685.2| 980|Drosophila melanogaster CG30389-P... 29 3.5 BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p pro... 28 6.0 AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-P... 28 6.0 BT001385-1|AAN71140.1| 374|Drosophila melanogaster GH03795p pro... 27 8.0 AE014296-1720|AAF50217.1| 374|Drosophila melanogaster CG18178-P... 27 8.0 >AY071415-1|AAL49037.1| 150|Drosophila melanogaster RE49852p protein. Length = 150 Score = 224 bits (548), Expect = 3e-59 Identities = 97/150 (64%), Positives = 120/150 (80%) Query: 1 MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIY 60 MSTRWYPIYQRGNPQLRVFLPNFWMKL+RP +Q PN+V F SMEMTKYD++NYLEKIY Sbjct: 1 MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIY 60 Query: 61 EVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEH 120 ++PVVDVRT+I MG+ KKD GY+ K+DDVK+A+VTLP+ +F +PD F + ++ + Sbjct: 61 KLPVVDVRTRIAMGETKKDQTYGYITKKDDVKLAYVTLPREESFVFPDFFSEKAEKQAKE 120 Query: 121 AKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 KSLDESK FR+++D NK RP P WFSI Sbjct: 121 EKSLDESKAGFRRFLDRNKKRPGTPGWFSI 150 >AE014296-445|AAF47639.1| 150|Drosophila melanogaster CG1320-PA protein. Length = 150 Score = 224 bits (548), Expect = 3e-59 Identities = 97/150 (64%), Positives = 120/150 (80%) Query: 1 MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIY 60 MSTRWYPIYQRGNPQLRVFLPNFWMKL+RP +Q PN+V F SMEMTKYD++NYLEKIY Sbjct: 1 MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIY 60 Query: 61 EVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEH 120 ++PVVDVRT+I MG+ KKD GY+ K+DDVK+A+VTLP+ +F +PD F + ++ + Sbjct: 61 KLPVVDVRTRIAMGETKKDQTYGYITKKDDVKLAYVTLPREESFVFPDFFSEKAEKQAKE 120 Query: 121 AKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 KSLDESK FR+++D NK RP P WFSI Sbjct: 121 EKSLDESKAGFRRFLDRNKKRPGTPGWFSI 150 >BT001596-1|AAN71351.1| 540|Drosophila melanogaster RE28470p protein. Length = 540 Score = 30.3 bits (65), Expect = 1.1 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 98 LPKTMTFKYPDLFEKSINEEEEHAK----SLDESKKNFR-KYIDHNKSRPDIPSWF 148 L + T DL E EE+E K +L+ +K+FR + + K P P+WF Sbjct: 201 LEQLKTHSNDDLLEDQQREEDEREKYKTVTLNSFRKSFRDRLLQQQKETPHNPAWF 256 >AE014296-2821|AAN11713.1| 540|Drosophila melanogaster CG32170-PA protein. Length = 540 Score = 30.3 bits (65), Expect = 1.1 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 98 LPKTMTFKYPDLFEKSINEEEEHAK----SLDESKKNFR-KYIDHNKSRPDIPSWF 148 L + T DL E EE+E K +L+ +K+FR + + K P P+WF Sbjct: 201 LEQLKTHSNDDLLEDQQREEDEREKYKTVTLNSFRKSFRDRLLQQQKETPHNPAWF 256 >M20231-1|AAA28720.1| 1135|Drosophila melanogaster protein ( D.melanogaster ninaCencoded short protein mRNA, complete cds. ). Length = 1135 Score = 28.7 bits (61), Expect = 3.5 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 +EEH S++E + R Y DH P++P ++ + Sbjct: 50 DEEHQVSIEEEYRTLRDYCDH----PNLPEFYGV 79 >M20230-1|AAA28721.1| 1501|Drosophila melanogaster protein ( D.melanogaster ninaCencoded long protein mRNA, complete cds. ). Length = 1501 Score = 28.7 bits (61), Expect = 3.5 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 +EEH S++E + R Y DH P++P ++ + Sbjct: 50 DEEHQVSIEEEYRTLRDYCDH----PNLPEFYGV 79 >J03131-2|AAA28719.1| 1135|Drosophila melanogaster protein ( D.melanogaster ninaCprotein genes, complete cds. ). Length = 1135 Score = 28.7 bits (61), Expect = 3.5 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 +EEH S++E + R Y DH P++P ++ + Sbjct: 50 DEEHQVSIEEEYRTLRDYCDH----PNLPEFYGV 79 >J03131-1|AAA28718.1| 1501|Drosophila melanogaster protein ( D.melanogaster ninaCprotein genes, complete cds. ). Length = 1501 Score = 28.7 bits (61), Expect = 3.5 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 +EEH S++E + R Y DH P++P ++ + Sbjct: 50 DEEHQVSIEEEYRTLRDYCDH----PNLPEFYGV 79 >AY119496-1|AAM50150.1| 1135|Drosophila melanogaster GH10824p protein. Length = 1135 Score = 28.7 bits (61), Expect = 3.5 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 +EEH S++E + R Y DH P++P ++ + Sbjct: 50 DEEHQVSIEEEYRTLRDYCDH----PNLPEFYGV 79 >AE014134-1264|AAF52505.1| 1135|Drosophila melanogaster CG5125-PA, isoform A protein. Length = 1135 Score = 28.7 bits (61), Expect = 3.5 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 +EEH S++E + R Y DH P++P ++ + Sbjct: 50 DEEHQVSIEEEYRTLRDYCDH----PNLPEFYGV 79 >AE014134-1263|AAF52504.3| 1501|Drosophila melanogaster CG5125-PB, isoform B protein. Length = 1501 Score = 28.7 bits (61), Expect = 3.5 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI 150 +EEH S++E + R Y DH P++P ++ + Sbjct: 50 DEEHQVSIEEEYRTLRDYCDH----PNLPEFYGV 79 >AE013599-3144|AAM70856.1| 980|Drosophila melanogaster CG30389-PC, isoform C protein. Length = 980 Score = 28.7 bits (61), Expect = 3.5 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 51 DIKNYLEKIYEVPVVD--VRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 108 D+K Y +I + ++ +R K++ K ++ + DD++ L + Sbjct: 573 DVKKYRAEISHMKQIENELRQKLDANLTSKSTLQAKQKECDDLEKRIQELNNARHADMLN 632 Query: 109 L--FEKSINEEEEHAKSLD---ESKKNFRKYIDHNKSRPDIPS 146 L E+ +NEE +SLD ++K RK + +RP+ S Sbjct: 633 LQTVERRLNEERRQKQSLDSQLSNEKKARKLAEEKAARPECSS 675 >AE013599-3143|AAF46685.2| 980|Drosophila melanogaster CG30389-PA, isoform A protein. Length = 980 Score = 28.7 bits (61), Expect = 3.5 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 51 DIKNYLEKIYEVPVVD--VRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 108 D+K Y +I + ++ +R K++ K ++ + DD++ L + Sbjct: 573 DVKKYRAEISHMKQIENELRQKLDANLTSKSTLQAKQKECDDLEKRIQELNNARHADMLN 632 Query: 109 L--FEKSINEEEEHAKSLD---ESKKNFRKYIDHNKSRPDIPS 146 L E+ +NEE +SLD ++K RK + +RP+ S Sbjct: 633 LQTVERRLNEERRQKQSLDSQLSNEKKARKLAEEKAARPECSS 675 >BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p protein. Length = 1312 Score = 27.9 bits (59), Expect = 6.0 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 66 DVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKS 123 DV +++ K + KE +V + ++P Y DL I E++H + Sbjct: 788 DVAADLSIKKVRLPAQAAASAKESEVGESTKSIPSPPLTPYGDLRPVGLCIKTEQDHEQE 847 Query: 124 LDESKKNFRKYIDHNKSRPD 143 LD+ + RK + PD Sbjct: 848 LDQEQGQERKREQEQEPEPD 867 >AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-PA protein. Length = 1311 Score = 27.9 bits (59), Expect = 6.0 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 66 DVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKS 123 DV +++ K + KE +V + ++P Y DL I E++H + Sbjct: 787 DVAADLSIKKVRLPAQAAASAKESEVGESTKSIPSPPLTPYGDLRPVGLCIKTEQDHEQE 846 Query: 124 LDESKKNFRKYIDHNKSRPD 143 LD+ + RK + PD Sbjct: 847 LDQEQGQERKREQEQEPEPD 866 >BT001385-1|AAN71140.1| 374|Drosophila melanogaster GH03795p protein. Length = 374 Score = 27.5 bits (58), Expect = 8.0 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Query: 64 VVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKT 101 +VD ++K + + KD+ K + K+D K FV+LPKT Sbjct: 141 LVDFKSKEDRDQAFKDI-KASIEKDDKHKGLFVSLPKT 177 >AE014296-1720|AAF50217.1| 374|Drosophila melanogaster CG18178-PA protein. Length = 374 Score = 27.5 bits (58), Expect = 8.0 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Query: 64 VVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKT 101 +VD ++K + + KD+ K + K+D K FV+LPKT Sbjct: 141 LVDFKSKEDRDQAFKDI-KASIEKDDKHKGLFVSLPKT 177 Database: fruitfly Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 24,830,863 Number of sequences in database: 52,641 Lambda K H 0.321 0.138 0.426 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,012,467 Number of Sequences: 52641 Number of extensions: 331800 Number of successful extensions: 1464 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 1462 Number of HSP's gapped (non-prelim): 17 length of query: 150 length of database: 24,830,863 effective HSP length: 79 effective length of query: 71 effective length of database: 20,672,224 effective search space: 1467727904 effective search space used: 1467727904 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 58 (27.5 bits)
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