BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001474-TA|BGIBMGA001474-PA|IPR013025|Ribosomal protein L25/L23, IPR012678|Ribosomal L23 and L15e, core (150 letters) Database: bee 429 sequences; 140,377 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 1.0 M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 23 1.8 AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 23 1.8 DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 21 4.1 DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 21 4.1 DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 21 5.4 DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 7.1 AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 7.1 AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 20 9.4 AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 20 9.4 AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 20 9.4 AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 20 9.4 AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 20 9.4 >AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex determiner protein. Length = 407 Score = 23.4 bits (48), Expect = 1.0 Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR 141 +KS E E+ K + SK+ FR + +S+ Sbjct: 280 QKSYKNEREYRKYRETSKERFRDRRERERSK 310 >M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-containing gene,partial cds, clone H55. ). Length = 86 Score = 22.6 bits (46), Expect = 1.8 Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 15 QLRVFLPNFWMKLVRPHPKQLPNIVHFHCS 44 Q++++ N MK + H NIV +H S Sbjct: 51 QIKIWFQNRRMKWKKEHKMASMNIVPYHMS 80 >AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation factor 2 protein. Length = 690 Score = 22.6 bits (46), Expect = 1.8 Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 51 DIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPK 100 D+K LE + E ++D I GK +++ +K+ + V+ + K Sbjct: 311 DLKGDLEGLVEGVIIDCSNHIGRGKLVTALIQRGTLKKGCLLVSGIASAK 360 >DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.4 bits (43), Expect = 4.1 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR-PDIPSWFS 149 +KS E ++ K + SK+ R + +SR P I S S Sbjct: 47 QKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLS 86 >DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex determiner protein. Length = 191 Score = 21.4 bits (43), Expect = 4.1 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR-PDIPSWFS 149 +KS E ++ K + SK+ R + +SR P I S S Sbjct: 47 QKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLS 86 >DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex determiner protein. Length = 189 Score = 21.0 bits (42), Expect = 5.4 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR-PDIPSWFS 149 + S E+E+ K + SK+ R + +SR P I S S Sbjct: 47 QNSYKNEKEYRKYRETSKERSRDRTERERSREPKIISSLS 86 >DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 20.6 bits (41), Expect = 7.1 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR-PDIPSWFS 149 +KS E + K + SK+ R + +SR P I S S Sbjct: 47 QKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLS 86 >AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex determiner protein. Length = 428 Score = 20.6 bits (41), Expect = 7.1 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR-PDIPSWFS 149 +KS E + K + SK+ R + +SR P I S S Sbjct: 280 QKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLS 319 >AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex determiner protein. Length = 396 Score = 20.2 bits (40), Expect = 9.4 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR 141 +KS E + K + SK+ R + +SR Sbjct: 269 QKSYKNENSYRKYRETSKERSRDRTERERSR 299 >AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex determiner protein. Length = 407 Score = 20.2 bits (40), Expect = 9.4 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR 141 +KS E + K + SK+ R + +SR Sbjct: 280 QKSYKNENSYRKYRETSKERSRDRTERERSR 310 >AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex determiner protein. Length = 407 Score = 20.2 bits (40), Expect = 9.4 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR 141 +KS E + K + SK+ R + +SR Sbjct: 280 QKSYKNENSYRKYRETSKERSRDRTERERSR 310 >AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex determiner protein. Length = 396 Score = 20.2 bits (40), Expect = 9.4 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 111 EKSINEEEEHAKSLDESKKNFRKYIDHNKSR 141 +KS E + K + SK+ R + +SR Sbjct: 269 QKSYKNENSYRKYRETSKERSRDRTERERSR 299 >AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic acetylcholine receptorApisa2 subunit protein. Length = 541 Score = 20.2 bits (40), Expect = 9.4 Identities = 9/40 (22%), Positives = 15/40 (37%) Query: 92 KVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNF 131 K+ LPK + + PD + + H + K F Sbjct: 338 KIFIRRLPKLLLMRVPDDLLNDLAAHKMHGRGRSGKKSKF 377 Database: bee Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 140,377 Number of sequences in database: 429 Lambda K H 0.321 0.138 0.426 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 50,999 Number of Sequences: 429 Number of extensions: 2587 Number of successful extensions: 13 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13 length of query: 150 length of database: 140,377 effective HSP length: 53 effective length of query: 97 effective length of database: 117,640 effective search space: 11411080 effective search space used: 11411080 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.4 bits) S2: 40 (20.2 bits)
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