Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001473-TA|BGIBMGA001473-PA|IPR004841|Amino acid
permease-associated region
         (767 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   3.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   5.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   7.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   7.8  

>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 11/90 (12%)

Query: 337 ITELSHRVTHSRSYNPQLLVLAGTPLQRPALIDVAHMLTKIGSFMIVADITDTALTKGER 396
           +  LS  +TH  S +PQ    AG P+      DV H +   G      ++ +    K ++
Sbjct: 74  LPHLSGDMTHGASISPQNTPPAGYPM------DVPHGMGSPG-----VNVPEYPWMKEKK 122

Query: 397 VSRQHIGEQFVKYRKLRAFYVLLQGLDLKR 426
            +R+   ++    R+LR  Y   Q L+L++
Sbjct: 123 TTRKSSQQENGLPRRLRTAYTNTQLLELEK 152


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 203 LSGMGALRDASGNVANLTTAALESCKPHCGY 233
           LS   AL+DA G  A+++       +P  GY
Sbjct: 36  LSNPYALKDAGGTAADMSAWTSAGLQPTTGY 66


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 623 LPLRIFAITKEQHKREFENKCMESLLKKFRIEYTELTLVRGI 664
           + L+ F +  ++H+ + +  C ES +     EY E T V  I
Sbjct: 470 MKLQSFPLLSQRHQIDAKMFCNESSVSNCENEYCECTHVVNI 511


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 112 LIGPSSDVERAKGFVGINLQTIRENWLPNFRYSEGREHDFFSVFAVYFPAVT 163
           LIG S   +  KGF G N +   ++  PN   + G  HD  + F+   P+ T
Sbjct: 202 LIG-SYSCKCPKGFQGQNCELNVDDCKPNPCQNGGTCHDLVNSFSCSCPSGT 252


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,840
Number of Sequences: 317
Number of extensions: 5593
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 767
length of database: 114,650
effective HSP length: 62
effective length of query: 705
effective length of database: 94,996
effective search space: 66972180
effective search space used: 66972180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)