Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001473-TA|BGIBMGA001473-PA|IPR004841|Amino acid
permease-associated region
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 87 5e-17
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 85 3e-16
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 31 3.4
10_08_0748 - 20277623-20277736,20277956-20279425 31 4.6
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273... 30 8.0
11_03_0004 + 8869629-8870774 30 8.0
03_05_0456 - 24498212-24499581,24502660-24503071 30 8.0
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 87.0 bits (206), Expect = 5e-17
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 3 ASERGGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIGFCDSLNHLLKTHG-----L 57
A + GG YYL+ R+LG E G S+G+ F NAVA SM +G ++ + + G +
Sbjct: 120 AMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGSMYVLGAVETFLDAVPSAGFFKESV 179
Query: 58 KIVDN-----------------DVNDIRIVGAVALLVMCVICAIGMDWETKAQNFLXXXX 100
+V+N ++D+++ G + +++C I G+ K
Sbjct: 180 TVVNNTLVNGTATASTATISTPSLHDLQVYGVIVTILLCFIVFGGVKIINKVAPAFLIPV 239
Query: 101 XXXXXXXXXGALIGPSSDVERAKGFVGINLQTIRENWLPNFRYSEGRE---------HDF 151
G I P + KG G+++ T ++NW ++ + DF
Sbjct: 240 LFSLLCIYLGVFIAPRHNAP--KGITGLSITTFKDNWGSEYQRTNNAGVPDPNGSIYWDF 297
Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVILSGMGALRD 211
++ ++FPAVTG+ AG+N LK+ +IP GTL A + Y V+L G A R+
Sbjct: 298 NALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLSATLTTTAMYLFSVLLFGALATRE 357
Score = 45.6 bits (103), Expect = 1e-04
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 15/175 (8%)
Query: 321 WGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLA--------GTPLQRPALIDVAH 372
WG + +Q + + L H +++ P L+ P P L D A+
Sbjct: 530 WGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCH-PKLADFAN 588
Query: 373 MLTKIGSFM-IVADITDT---ALTKGERVSRQHIGEQFVKYRKLRAFYVLLQGLDLKRGA 428
+ K G M I I D L + + + + + + +++Y++ ++ + G
Sbjct: 589 CMKKKGRGMSIFVSIIDGDYHELAEDAKTACRQL-DTYIEYKRCEGVAEIIVAPSMSEGF 647
Query: 429 NALMQASGLGKLSPNILLIGFKKDWTNAEHKQI-SDYYGVIQDAFDLKLAVTILR 482
+++Q GLG L PNI+++ + + W QI S + +I D AV I++
Sbjct: 648 RSIVQTMGLGNLKPNIIVMRYPEIWRRENLIQIPSTFVSIINDCIIANKAVVIVK 702
Score = 36.3 bits (80), Expect = 0.092
Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 28/195 (14%)
Query: 592 KQY--VDAWWLYEDGGLNILLPYIIARRGYKHKLPLRIFAITKEQHKREFENKCMESLLK 649
+QY +D +W+ DGGL +LL ++ + +++F I +E E ++ L
Sbjct: 713 RQYGTIDLYWIVRDGGLMLLLSQLLLTKETFESCKIQVFCIAEEDTDAEELKADVKKFLY 772
Query: 650 KFRIEYTELTLVR----------GIGDAPPESSWKMFNNI---INDFKSEEKTD------ 690
R+ + E+ +V AP + S + + + I+ + SE K
Sbjct: 773 DLRM-HAEVIVVTMKSWEPHMESSSSGAPQDDSQEAYTSAQRRISTYLSEMKETAQREGH 831
Query: 691 -ILTSEAELKSQYSKTSXXXXXX----XXXXQHSTKAAIVIITLPLPR-KVSASLYMAWL 744
++ ++ K ++S AA+V+++LP P A YM ++
Sbjct: 832 PLMEDGKQVVVNEQKIEKFLYTMFKLNSTILRYSRMAAVVLVSLPPPPLNHPAYFYMEYM 891
Query: 745 EVLSRDLPPVLFVRG 759
++L ++P +L VRG
Sbjct: 892 DLLVENVPRMLIVRG 906
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 84.6 bits (200), Expect = 3e-16
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 26/233 (11%)
Query: 3 ASERGGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIG--------------FCDSL 48
A + GG YYL+ R+LG E G S+G+ F NAVA +M +G F +S+
Sbjct: 126 AMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLDAVPSAEFFQESV 185
Query: 49 NHLLKT--------HGLKIVDNDVNDIRIVGAVALLVMCVICAIGMDWETKAQNFLXXXX 100
+ T + I +++D+++ G + +++C I G+ K
Sbjct: 186 TVVTNTFVNGTAAGNATTISTPNLHDLQVYGIIVTILLCFIVFGGVKIINKVAPAFLIPV 245
Query: 101 XXXXXXXXXGALIGPSSDVERAKGFVGINLQTIRENWLPNFRYSE--GREHDFFSVFAVY 158
G I P + +K G+++ T+++NW +++ + G ++ +Y
Sbjct: 246 LFSILCIYIGVFIAPRPNA--SKWITGLSITTLKDNWSSDYQRTNNAGVPDPNGALLGLY 303
Query: 159 FPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVILSGMGALRD 211
FPAVTG+ AG+N LK+ +IP GTL A + Y V L G + R+
Sbjct: 304 FPAVTGIMAGSNRSASLKDTQRSIPIGTLHATISTTMMYLLSVFLFGALSTRE 356
Score = 42.3 bits (95), Expect = 0.001
Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 321 WGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLAGT----PLQ---RPALIDVAHM 373
WG + +Q + + + H +++ P L+ P P L D A+
Sbjct: 522 WGDGFKSAYFQLALRSLRSMGANQVHPKNWYPIPLIFCRPWGKLPEDVPCHPKLADFANC 581
Query: 374 LTKIGSFM-IVADITDTALTKGERVSRQHIGE--QFVKYRKLRAFYVLLQGLDLKRGANA 430
+ K G M I I D + ++ + ++ YR+ ++ G +
Sbjct: 582 MKKKGRGMSIFVSIIDGDYHESAEDAKTACRQLSAYIDYRRCEGVAEIIVAPSTSIGFRS 641
Query: 431 LMQASGLGKLSPNILLIGFKKDWTNAEHKQI-SDYYGVIQDAFDLKLAVTILR 482
++Q GLG L PNI+++ + + W QI S + +I D AV I++
Sbjct: 642 IVQTMGLGNLKPNIVVMRYPEIWRRENLTQIPSTFVSIINDCITANKAVVIVK 694
Score = 41.5 bits (93), Expect = 0.002
Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 24/192 (12%)
Query: 592 KQY--VDAWWLYEDGGLNILLPYIIARRGYKHKLPLRIFAITKEQHKREFENKCMESLLK 649
+QY +D +W+ DGGL +LL ++ + +++F I +E + E ++ L
Sbjct: 705 RQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKADVKKFLY 764
Query: 650 KFRIEYTELTLVRGIGDAPPE--------------SSWKMFNNIINDFK---SEEKTDIL 692
R++ + + +A P+ S+ I+ K E+ ++
Sbjct: 765 DLRMQADVIVVTVKSWEADPDRSGGSKKDDPEVYRSAQSRIRTYISQLKEAAERERRPLM 824
Query: 693 TSEAELKSQYSKTS----XXXXXXXXXXQHSTKAAIVIITL-PLPRKVSASLYMAWLEVL 747
++ K +HS A +V+++L P P A YM ++++L
Sbjct: 825 EGGKQVVVDEQKVEKFLYTMLKLNATILRHSRMAVVVLVSLPPPPLNHLAYCYMEYMDLL 884
Query: 748 SRDLPPVLFVRG 759
++P +L VRG
Sbjct: 885 VENIPRILIVRG 896
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSY 197
F+ AV F A G A + + + ++PA IP G + A+A++ +Y
Sbjct: 273 FAASAVLFFAYVGFDAVSTMAEETRDPARDIPAGLVGAMAVTTAAY 318
>10_08_0748 - 20277623-20277736,20277956-20279425
Length = 527
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 547 NETSSSEQNPESIGGEALRSANFSRTSRRKLSNGALSFRALSFNCKQYVDAWW 599
N +S S +P +RSA+ + T R ++ G + AL + K+Y+ WW
Sbjct: 80 NGSSPSSSSPPPTPVRPMRSADEAPTGLRHIAFGIGASSALWKSRKEYIKLWW 132
>11_04_0195 -
14725553-14725571,14725988-14726079,14727214-14727335,
14727588-14727597,14727798-14727896,14728046-14728612
Length = 302
Score = 29.9 bits (64), Expect = 8.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 550 SSSEQNPESIGGEALRSANFSRTSRRKLSNGALSF--RALSFNCKQYVD 596
+S +P + GEAL + +T +K++ G ++F R L F+CK + D
Sbjct: 198 ASCHHSPTTAAGEALVQQSGGQT--KKINEGTVNFQSRGLPFSCKDHCD 244
>11_03_0004 + 8869629-8870774
Length = 381
Score = 29.9 bits (64), Expect = 8.0
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 177 NPAVAIPKGTLLALAISVTSYFTMVILSGMGALRDASGNVANLTTAALESCKPHCGYGL 235
NP V L+ ++ + Y +V L+G+ L D + N ++ A+L+S +C G+
Sbjct: 58 NPKVYKEHANCLSKLLARSPYLNLVSLAGLTELPDTALNQLRISGASLQSLSFYCCSGI 116
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 29.9 bits (64), Expect = 8.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVI 202
F+ AV F A G A + + + ++PA IP G + A+A++ Y + +
Sbjct: 270 FAASAVLFFAYIGFDAVSTMAEETRDPARDIPVGLVGAMALTTALYCALAV 320
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,306,389
Number of Sequences: 37544
Number of extensions: 706910
Number of successful extensions: 1491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1473
Number of HSP's gapped (non-prelim): 16
length of query: 767
length of database: 14,793,348
effective HSP length: 88
effective length of query: 679
effective length of database: 11,489,476
effective search space: 7801354204
effective search space used: 7801354204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)
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