BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001473-TA|BGIBMGA001473-PA|IPR004841|Amino acid permease-associated region (767 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 103 7e-23 SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 28 4.2 SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 7.4 SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 7.4 >SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces pombe|chr 2|||Manual Length = 1050 Score = 103 bits (248), Expect = 7e-23 Identities = 85/337 (25%), Positives = 137/337 (40%), Gaps = 28/337 (8%) Query: 7 GGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIGFCDSLNHLL-KTHGL--KIVDND 63 GG YY VSRS+G E G S+G++F + MN GF + + + K G + + Sbjct: 142 GGAYYAVSRSIGPELGGSIGLIFYVGQILNTGMNISGFVEPIISIFGKESGTISQFLPEG 201 Query: 64 VNDIRIVGAVALLVMCVICAIGMDWETKAQNFLXXXXXXXXXXXXXGAL-IGPSSDVERA 122 + + L + C++C +G KA N L ++ + P D Sbjct: 202 YWWVFLYTTCVLAMCCILCCLGSAIFAKASNALFVVIILSTISIPISSIFVHPFKDPSLL 261 Query: 123 KGFVGINLQTIRENWLPNFRYSE-GREHDFF-SVFAVYFPAVTGVQAGANICGDLKNPAV 180 F G+ T+ +N + +E G ++ F S F V+FPA G+ AGA++ GDLK P+ Sbjct: 262 VHFTGLKWSTLMKNLASAYTENEKGTGYESFKSTFGVFFPATAGLLAGASMSGDLKAPSR 321 Query: 181 AIPKGTLLALAISVTSYFTMVILSGMGALRDASGNVANLTTAALESCKPHCGYGLHNNYA 240 +IPKGT+ + A + Y +++ G R GL + Sbjct: 322 SIPKGTISSQATTFLLYLLVILCVGASVTRT----------------------GLLLDMD 359 Query: 241 IMQLMSAWGPFIYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKPYGRHGEP 300 +M+ +S FI +G +L+QA+ D + PG+ FF+K P Sbjct: 360 VMEHISLHPLFIISGILSSGAFSSFMGIFGAAKLLQAIARDDLIPGMFFFAKGSSYDDIP 419 Query: 301 YRGYXXXXXXXXXXXXIDVSWGSSTEGQRYQDTVSFI 337 Y D++ SS + T FI Sbjct: 420 YVAIGVTYLITQISLFWDINMLSSMITMTFLLTFGFI 456 Score = 51.6 bits (118), Expect = 4e-07 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Query: 320 SWGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLAGTPLQRPALIDVAHMLTKIGS 379 +WG ++G Y ++ + + + + + PQ+L+L P + +I + L K GS Sbjct: 524 NWGDVSQGIIYHQLRKYLLQTNKARENIKFWRPQILLLINNPNRSENVIRFCNSLKK-GS 582 Query: 380 FMIVADIT---DTALTKGERVSRQHIGEQFVKYRKLRAFYVLLQGLDLKRGANALMQASG 436 I+ + D + + +Q + QFV R ++AF L D G L+ ++G Sbjct: 583 LYILGHVIVSDDFQASMDDLRKQQRLWHQFVLDRGIKAFVELTIAPDEVWGIRGLISSAG 642 Query: 437 LGKLSPNILLIGF 449 LG + PNI ++ F Sbjct: 643 LGGIRPNIAVLTF 655 >SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr 2|||Manual Length = 1136 Score = 28.3 bits (60), Expect = 4.2 Identities = 12/25 (48%), Positives = 18/25 (72%) Query: 354 LLVLAGTPLQRPALIDVAHMLTKIG 378 L+VL+ TPL++ L+D + LTK G Sbjct: 958 LMVLSTTPLKKSCLLDFVNQLTKQG 982 >SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces pombe|chr 1|||Manual Length = 580 Score = 27.5 bits (58), Expect = 7.4 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Query: 149 HDFFSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVILSGMGA 208 H F SVF+ + G + + KNPA A PK + + I V S F ++ L + Sbjct: 270 HGFCSVFSTAAFSYAGTEYIGIAASETKNPAKAFPK-AVKQVFIRV-SLFYILALFVVSL 327 Query: 209 LRDASGNVANLTTAALESCKP 229 L SG LTT + + P Sbjct: 328 L--ISGRDERLTTLSATAASP 346 >SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr 3|||Manual Length = 923 Score = 27.5 bits (58), Expect = 7.4 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 12/79 (15%) Query: 399 RQHIGEQFVKYRKLRAFYVLLQGLDLKRGANALMQASGLGKL-------SPNILLIGFKK 451 RQH+G Y LR ++ LD +RG+ + GLGKL SP K Sbjct: 64 RQHVGPDL--YPLLRLSNLIF--LDRERGSYGFKEF-GLGKLFIRAMHLSPTSEDAKSLK 118 Query: 452 DWTNAEHKQISDYYGVIQD 470 +W +E K D+ ++QD Sbjct: 119 NWRGSESKHTGDFSTMLQD 137 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.321 0.136 0.409 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,014,680 Number of Sequences: 5004 Number of extensions: 111040 Number of successful extensions: 238 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 230 Number of HSP's gapped (non-prelim): 7 length of query: 767 length of database: 2,362,478 effective HSP length: 78 effective length of query: 689 effective length of database: 1,972,166 effective search space: 1358822374 effective search space used: 1358822374 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 57 (27.1 bits)
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