GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001473-TA|BGIBMGA001473-PA|IPR004841|Amino acid
permease-associated region
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...   103   7e-23
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    28   4.2  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   7.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    27   7.4  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score =  103 bits (248), Expect = 7e-23
 Identities = 85/337 (25%), Positives = 137/337 (40%), Gaps = 28/337 (8%)

Query: 7   GGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIGFCDSLNHLL-KTHGL--KIVDND 63
           GG YY VSRS+G E G S+G++F     +   MN  GF + +  +  K  G   + +   
Sbjct: 142 GGAYYAVSRSIGPELGGSIGLIFYVGQILNTGMNISGFVEPIISIFGKESGTISQFLPEG 201

Query: 64  VNDIRIVGAVALLVMCVICAIGMDWETKAQNFLXXXXXXXXXXXXXGAL-IGPSSDVERA 122
              + +     L + C++C +G     KA N L              ++ + P  D    
Sbjct: 202 YWWVFLYTTCVLAMCCILCCLGSAIFAKASNALFVVIILSTISIPISSIFVHPFKDPSLL 261

Query: 123 KGFVGINLQTIRENWLPNFRYSE-GREHDFF-SVFAVYFPAVTGVQAGANICGDLKNPAV 180
             F G+   T+ +N    +  +E G  ++ F S F V+FPA  G+ AGA++ GDLK P+ 
Sbjct: 262 VHFTGLKWSTLMKNLASAYTENEKGTGYESFKSTFGVFFPATAGLLAGASMSGDLKAPSR 321

Query: 181 AIPKGTLLALAISVTSYFTMVILSGMGALRDASGNVANLTTAALESCKPHCGYGLHNNYA 240
           +IPKGT+ + A +   Y  +++  G    R                       GL  +  
Sbjct: 322 SIPKGTISSQATTFLLYLLVILCVGASVTRT----------------------GLLLDMD 359

Query: 241 IMQLMSAWGPFIYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKPYGRHGEP 300
           +M+ +S    FI +G                 +L+QA+  D + PG+ FF+K       P
Sbjct: 360 VMEHISLHPLFIISGILSSGAFSSFMGIFGAAKLLQAIARDDLIPGMFFFAKGSSYDDIP 419

Query: 301 YRGYXXXXXXXXXXXXIDVSWGSSTEGQRYQDTVSFI 337
           Y                D++  SS     +  T  FI
Sbjct: 420 YVAIGVTYLITQISLFWDINMLSSMITMTFLLTFGFI 456



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 320 SWGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLAGTPLQRPALIDVAHMLTKIGS 379
           +WG  ++G  Y     ++ + +    + + + PQ+L+L   P +   +I   + L K GS
Sbjct: 524 NWGDVSQGIIYHQLRKYLLQTNKARENIKFWRPQILLLINNPNRSENVIRFCNSLKK-GS 582

Query: 380 FMIVADIT---DTALTKGERVSRQHIGEQFVKYRKLRAFYVLLQGLDLKRGANALMQASG 436
             I+  +    D   +  +   +Q +  QFV  R ++AF  L    D   G   L+ ++G
Sbjct: 583 LYILGHVIVSDDFQASMDDLRKQQRLWHQFVLDRGIKAFVELTIAPDEVWGIRGLISSAG 642

Query: 437 LGKLSPNILLIGF 449
           LG + PNI ++ F
Sbjct: 643 LGGIRPNIAVLTF 655


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 354 LLVLAGTPLQRPALIDVAHMLTKIG 378
           L+VL+ TPL++  L+D  + LTK G
Sbjct: 958 LMVLSTTPLKKSCLLDFVNQLTKQG 982


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 149 HDFFSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVILSGMGA 208
           H F SVF+    +  G +       + KNPA A PK  +  + I V S F ++ L  +  
Sbjct: 270 HGFCSVFSTAAFSYAGTEYIGIAASETKNPAKAFPK-AVKQVFIRV-SLFYILALFVVSL 327

Query: 209 LRDASGNVANLTTAALESCKP 229
           L   SG    LTT +  +  P
Sbjct: 328 L--ISGRDERLTTLSATAASP 346


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 399 RQHIGEQFVKYRKLRAFYVLLQGLDLKRGANALMQASGLGKL-------SPNILLIGFKK 451
           RQH+G     Y  LR   ++   LD +RG+    +  GLGKL       SP        K
Sbjct: 64  RQHVGPDL--YPLLRLSNLIF--LDRERGSYGFKEF-GLGKLFIRAMHLSPTSEDAKSLK 118

Query: 452 DWTNAEHKQISDYYGVIQD 470
           +W  +E K   D+  ++QD
Sbjct: 119 NWRGSESKHTGDFSTMLQD 137


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,680
Number of Sequences: 5004
Number of extensions: 111040
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 7
length of query: 767
length of database: 2,362,478
effective HSP length: 78
effective length of query: 689
effective length of database: 1,972,166
effective search space: 1358822374
effective search space used: 1358822374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)