BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001473-TA|BGIBMGA001473-PA|IPR004841|Amino acid permease-associated region (767 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 87 5e-17 01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 85 3e-16 12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 31 3.4 10_08_0748 - 20277623-20277736,20277956-20279425 31 4.6 11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273... 30 8.0 11_03_0004 + 8869629-8870774 30 8.0 03_05_0456 - 24498212-24499581,24502660-24503071 30 8.0 >08_02_0200 - 14179389-14180488,14180575-14180736,14180983-14181383, 14182078-14182272,14182980-14183094,14183180-14183428, 14184032-14184093,14184335-14184435,14184701-14184815, 14185211-14185302,14187619-14187777 Length = 916 Score = 87.0 bits (206), Expect = 5e-17 Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 33/240 (13%) Query: 3 ASERGGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIGFCDSLNHLLKTHG-----L 57 A + GG YYL+ R+LG E G S+G+ F NAVA SM +G ++ + + G + Sbjct: 120 AMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGSMYVLGAVETFLDAVPSAGFFKESV 179 Query: 58 KIVDN-----------------DVNDIRIVGAVALLVMCVICAIGMDWETKAQNFLXXXX 100 +V+N ++D+++ G + +++C I G+ K Sbjct: 180 TVVNNTLVNGTATASTATISTPSLHDLQVYGVIVTILLCFIVFGGVKIINKVAPAFLIPV 239 Query: 101 XXXXXXXXXGALIGPSSDVERAKGFVGINLQTIRENWLPNFRYSEGRE---------HDF 151 G I P + KG G+++ T ++NW ++ + DF Sbjct: 240 LFSLLCIYLGVFIAPRHNAP--KGITGLSITTFKDNWGSEYQRTNNAGVPDPNGSIYWDF 297 Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVILSGMGALRD 211 ++ ++FPAVTG+ AG+N LK+ +IP GTL A + Y V+L G A R+ Sbjct: 298 NALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLSATLTTTAMYLFSVLLFGALATRE 357 Score = 45.6 bits (103), Expect = 1e-04 Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 15/175 (8%) Query: 321 WGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLA--------GTPLQRPALIDVAH 372 WG + +Q + + L H +++ P L+ P P L D A+ Sbjct: 530 WGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCH-PKLADFAN 588 Query: 373 MLTKIGSFM-IVADITDT---ALTKGERVSRQHIGEQFVKYRKLRAFYVLLQGLDLKRGA 428 + K G M I I D L + + + + + + +++Y++ ++ + G Sbjct: 589 CMKKKGRGMSIFVSIIDGDYHELAEDAKTACRQL-DTYIEYKRCEGVAEIIVAPSMSEGF 647 Query: 429 NALMQASGLGKLSPNILLIGFKKDWTNAEHKQI-SDYYGVIQDAFDLKLAVTILR 482 +++Q GLG L PNI+++ + + W QI S + +I D AV I++ Sbjct: 648 RSIVQTMGLGNLKPNIIVMRYPEIWRRENLIQIPSTFVSIINDCIIANKAVVIVK 702 Score = 36.3 bits (80), Expect = 0.092 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 28/195 (14%) Query: 592 KQY--VDAWWLYEDGGLNILLPYIIARRGYKHKLPLRIFAITKEQHKREFENKCMESLLK 649 +QY +D +W+ DGGL +LL ++ + +++F I +E E ++ L Sbjct: 713 RQYGTIDLYWIVRDGGLMLLLSQLLLTKETFESCKIQVFCIAEEDTDAEELKADVKKFLY 772 Query: 650 KFRIEYTELTLVR----------GIGDAPPESSWKMFNNI---INDFKSEEKTD------ 690 R+ + E+ +V AP + S + + + I+ + SE K Sbjct: 773 DLRM-HAEVIVVTMKSWEPHMESSSSGAPQDDSQEAYTSAQRRISTYLSEMKETAQREGH 831 Query: 691 -ILTSEAELKSQYSKTSXXXXXX----XXXXQHSTKAAIVIITLPLPR-KVSASLYMAWL 744 ++ ++ K ++S AA+V+++LP P A YM ++ Sbjct: 832 PLMEDGKQVVVNEQKIEKFLYTMFKLNSTILRYSRMAAVVLVSLPPPPLNHPAYFYMEYM 891 Query: 745 EVLSRDLPPVLFVRG 759 ++L ++P +L VRG Sbjct: 892 DLLVENVPRMLIVRG 906 >01_02_0116 - 11252220-11253313,11253398-11253559,11253977-11254306, 11254328-11254377,11255195-11255389,11255532-11255625, 11255713-11255961,11256831-11256892,11257434-11257534, 11257766-11257880,11258384-11258475,11259197-11259333, 11259721-11259760 Length = 906 Score = 84.6 bits (200), Expect = 3e-16 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 26/233 (11%) Query: 3 ASERGGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIG--------------FCDSL 48 A + GG YYL+ R+LG E G S+G+ F NAVA +M +G F +S+ Sbjct: 126 AMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLDAVPSAEFFQESV 185 Query: 49 NHLLKT--------HGLKIVDNDVNDIRIVGAVALLVMCVICAIGMDWETKAQNFLXXXX 100 + T + I +++D+++ G + +++C I G+ K Sbjct: 186 TVVTNTFVNGTAAGNATTISTPNLHDLQVYGIIVTILLCFIVFGGVKIINKVAPAFLIPV 245 Query: 101 XXXXXXXXXGALIGPSSDVERAKGFVGINLQTIRENWLPNFRYSE--GREHDFFSVFAVY 158 G I P + +K G+++ T+++NW +++ + G ++ +Y Sbjct: 246 LFSILCIYIGVFIAPRPNA--SKWITGLSITTLKDNWSSDYQRTNNAGVPDPNGALLGLY 303 Query: 159 FPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVILSGMGALRD 211 FPAVTG+ AG+N LK+ +IP GTL A + Y V L G + R+ Sbjct: 304 FPAVTGIMAGSNRSASLKDTQRSIPIGTLHATISTTMMYLLSVFLFGALSTRE 356 Score = 42.3 bits (95), Expect = 0.001 Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 11/173 (6%) Query: 321 WGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLAGT----PLQ---RPALIDVAHM 373 WG + +Q + + + H +++ P L+ P P L D A+ Sbjct: 522 WGDGFKSAYFQLALRSLRSMGANQVHPKNWYPIPLIFCRPWGKLPEDVPCHPKLADFANC 581 Query: 374 LTKIGSFM-IVADITDTALTKGERVSRQHIGE--QFVKYRKLRAFYVLLQGLDLKRGANA 430 + K G M I I D + ++ + ++ YR+ ++ G + Sbjct: 582 MKKKGRGMSIFVSIIDGDYHESAEDAKTACRQLSAYIDYRRCEGVAEIIVAPSTSIGFRS 641 Query: 431 LMQASGLGKLSPNILLIGFKKDWTNAEHKQI-SDYYGVIQDAFDLKLAVTILR 482 ++Q GLG L PNI+++ + + W QI S + +I D AV I++ Sbjct: 642 IVQTMGLGNLKPNIVVMRYPEIWRRENLTQIPSTFVSIINDCITANKAVVIVK 694 Score = 41.5 bits (93), Expect = 0.002 Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 24/192 (12%) Query: 592 KQY--VDAWWLYEDGGLNILLPYIIARRGYKHKLPLRIFAITKEQHKREFENKCMESLLK 649 +QY +D +W+ DGGL +LL ++ + +++F I +E + E ++ L Sbjct: 705 RQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKADVKKFLY 764 Query: 650 KFRIEYTELTLVRGIGDAPPE--------------SSWKMFNNIINDFK---SEEKTDIL 692 R++ + + +A P+ S+ I+ K E+ ++ Sbjct: 765 DLRMQADVIVVTVKSWEADPDRSGGSKKDDPEVYRSAQSRIRTYISQLKEAAERERRPLM 824 Query: 693 TSEAELKSQYSKTS----XXXXXXXXXXQHSTKAAIVIITL-PLPRKVSASLYMAWLEVL 747 ++ K +HS A +V+++L P P A YM ++++L Sbjct: 825 EGGKQVVVDEQKVEKFLYTMLKLNATILRHSRMAVVVLVSLPPPPLNHLAYCYMEYMDLL 884 Query: 748 SRDLPPVLFVRG 759 ++P +L VRG Sbjct: 885 VENIPRILIVRG 896 >12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 Length = 601 Score = 31.1 bits (67), Expect = 3.4 Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSY 197 F+ AV F A G A + + + ++PA IP G + A+A++ +Y Sbjct: 273 FAASAVLFFAYVGFDAVSTMAEETRDPARDIPAGLVGAMAVTTAAY 318 >10_08_0748 - 20277623-20277736,20277956-20279425 Length = 527 Score = 30.7 bits (66), Expect = 4.6 Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 547 NETSSSEQNPESIGGEALRSANFSRTSRRKLSNGALSFRALSFNCKQYVDAWW 599 N +S S +P +RSA+ + T R ++ G + AL + K+Y+ WW Sbjct: 80 NGSSPSSSSPPPTPVRPMRSADEAPTGLRHIAFGIGASSALWKSRKEYIKLWW 132 >11_04_0195 - 14725553-14725571,14725988-14726079,14727214-14727335, 14727588-14727597,14727798-14727896,14728046-14728612 Length = 302 Score = 29.9 bits (64), Expect = 8.0 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%) Query: 550 SSSEQNPESIGGEALRSANFSRTSRRKLSNGALSF--RALSFNCKQYVD 596 +S +P + GEAL + +T +K++ G ++F R L F+CK + D Sbjct: 198 ASCHHSPTTAAGEALVQQSGGQT--KKINEGTVNFQSRGLPFSCKDHCD 244 >11_03_0004 + 8869629-8870774 Length = 381 Score = 29.9 bits (64), Expect = 8.0 Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 177 NPAVAIPKGTLLALAISVTSYFTMVILSGMGALRDASGNVANLTTAALESCKPHCGYGL 235 NP V L+ ++ + Y +V L+G+ L D + N ++ A+L+S +C G+ Sbjct: 58 NPKVYKEHANCLSKLLARSPYLNLVSLAGLTELPDTALNQLRISGASLQSLSFYCCSGI 116 >03_05_0456 - 24498212-24499581,24502660-24503071 Length = 593 Score = 29.9 bits (64), Expect = 8.0 Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVI 202 F+ AV F A G A + + + ++PA IP G + A+A++ Y + + Sbjct: 270 FAASAVLFFAYIGFDAVSTMAEETRDPARDIPVGLVGAMALTTALYCALAV 320 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.321 0.136 0.409 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,306,389 Number of Sequences: 37544 Number of extensions: 706910 Number of successful extensions: 1491 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1473 Number of HSP's gapped (non-prelim): 16 length of query: 767 length of database: 14,793,348 effective HSP length: 88 effective length of query: 679 effective length of database: 11,489,476 effective search space: 7801354204 effective search space used: 7801354204 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 64 (29.9 bits)
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