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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001473-TA|BGIBMGA001473-PA|IPR004841|Amino acid
permease-associated region
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    87   5e-17
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    85   3e-16
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686     31   3.4  
10_08_0748 - 20277623-20277736,20277956-20279425                       31   4.6  
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273...    30   8.0  
11_03_0004 + 8869629-8870774                                           30   8.0  
03_05_0456 - 24498212-24499581,24502660-24503071                       30   8.0  

>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 87.0 bits (206), Expect = 5e-17
 Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 33/240 (13%)

Query: 3   ASERGGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIGFCDSLNHLLKTHG-----L 57
           A + GG YYL+ R+LG E G S+G+ F   NAVA SM  +G  ++    + + G     +
Sbjct: 120 AMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGSMYVLGAVETFLDAVPSAGFFKESV 179

Query: 58  KIVDN-----------------DVNDIRIVGAVALLVMCVICAIGMDWETKAQNFLXXXX 100
            +V+N                  ++D+++ G +  +++C I   G+    K         
Sbjct: 180 TVVNNTLVNGTATASTATISTPSLHDLQVYGVIVTILLCFIVFGGVKIINKVAPAFLIPV 239

Query: 101 XXXXXXXXXGALIGPSSDVERAKGFVGINLQTIRENWLPNFRYSEGRE---------HDF 151
                    G  I P  +    KG  G+++ T ++NW   ++ +              DF
Sbjct: 240 LFSLLCIYLGVFIAPRHNAP--KGITGLSITTFKDNWGSEYQRTNNAGVPDPNGSIYWDF 297

Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVILSGMGALRD 211
            ++  ++FPAVTG+ AG+N    LK+   +IP GTL A   +   Y   V+L G  A R+
Sbjct: 298 NALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLSATLTTTAMYLFSVLLFGALATRE 357



 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 15/175 (8%)

Query: 321 WGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLA--------GTPLQRPALIDVAH 372
           WG   +   +Q  +  +  L     H +++ P  L+            P   P L D A+
Sbjct: 530 WGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCH-PKLADFAN 588

Query: 373 MLTKIGSFM-IVADITDT---ALTKGERVSRQHIGEQFVKYRKLRAFYVLLQGLDLKRGA 428
            + K G  M I   I D     L +  + + + + + +++Y++      ++    +  G 
Sbjct: 589 CMKKKGRGMSIFVSIIDGDYHELAEDAKTACRQL-DTYIEYKRCEGVAEIIVAPSMSEGF 647

Query: 429 NALMQASGLGKLSPNILLIGFKKDWTNAEHKQI-SDYYGVIQDAFDLKLAVTILR 482
            +++Q  GLG L PNI+++ + + W      QI S +  +I D      AV I++
Sbjct: 648 RSIVQTMGLGNLKPNIIVMRYPEIWRRENLIQIPSTFVSIINDCIIANKAVVIVK 702



 Score = 36.3 bits (80), Expect = 0.092
 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 28/195 (14%)

Query: 592 KQY--VDAWWLYEDGGLNILLPYIIARRGYKHKLPLRIFAITKEQHKREFENKCMESLLK 649
           +QY  +D +W+  DGGL +LL  ++  +       +++F I +E    E     ++  L 
Sbjct: 713 RQYGTIDLYWIVRDGGLMLLLSQLLLTKETFESCKIQVFCIAEEDTDAEELKADVKKFLY 772

Query: 650 KFRIEYTELTLVR----------GIGDAPPESSWKMFNNI---INDFKSEEKTD------ 690
             R+ + E+ +V               AP + S + + +    I+ + SE K        
Sbjct: 773 DLRM-HAEVIVVTMKSWEPHMESSSSGAPQDDSQEAYTSAQRRISTYLSEMKETAQREGH 831

Query: 691 -ILTSEAELKSQYSKTSXXXXXX----XXXXQHSTKAAIVIITLPLPR-KVSASLYMAWL 744
            ++    ++     K                ++S  AA+V+++LP P     A  YM ++
Sbjct: 832 PLMEDGKQVVVNEQKIEKFLYTMFKLNSTILRYSRMAAVVLVSLPPPPLNHPAYFYMEYM 891

Query: 745 EVLSRDLPPVLFVRG 759
           ++L  ++P +L VRG
Sbjct: 892 DLLVENVPRMLIVRG 906


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 84.6 bits (200), Expect = 3e-16
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 26/233 (11%)

Query: 3   ASERGGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIG--------------FCDSL 48
           A + GG YYL+ R+LG E G S+G+ F   NAVA +M  +G              F +S+
Sbjct: 126 AMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLDAVPSAEFFQESV 185

Query: 49  NHLLKT--------HGLKIVDNDVNDIRIVGAVALLVMCVICAIGMDWETKAQNFLXXXX 100
             +  T        +   I   +++D+++ G +  +++C I   G+    K         
Sbjct: 186 TVVTNTFVNGTAAGNATTISTPNLHDLQVYGIIVTILLCFIVFGGVKIINKVAPAFLIPV 245

Query: 101 XXXXXXXXXGALIGPSSDVERAKGFVGINLQTIRENWLPNFRYSE--GREHDFFSVFAVY 158
                    G  I P  +   +K   G+++ T+++NW  +++ +   G      ++  +Y
Sbjct: 246 LFSILCIYIGVFIAPRPNA--SKWITGLSITTLKDNWSSDYQRTNNAGVPDPNGALLGLY 303

Query: 159 FPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVILSGMGALRD 211
           FPAVTG+ AG+N    LK+   +IP GTL A   +   Y   V L G  + R+
Sbjct: 304 FPAVTGIMAGSNRSASLKDTQRSIPIGTLHATISTTMMYLLSVFLFGALSTRE 356



 Score = 42.3 bits (95), Expect = 0.001
 Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 11/173 (6%)

Query: 321 WGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLAGT----PLQ---RPALIDVAHM 373
           WG   +   +Q  +  +  +     H +++ P  L+        P      P L D A+ 
Sbjct: 522 WGDGFKSAYFQLALRSLRSMGANQVHPKNWYPIPLIFCRPWGKLPEDVPCHPKLADFANC 581

Query: 374 LTKIGSFM-IVADITDTALTKGERVSRQHIGE--QFVKYRKLRAFYVLLQGLDLKRGANA 430
           + K G  M I   I D    +    ++    +   ++ YR+      ++       G  +
Sbjct: 582 MKKKGRGMSIFVSIIDGDYHESAEDAKTACRQLSAYIDYRRCEGVAEIIVAPSTSIGFRS 641

Query: 431 LMQASGLGKLSPNILLIGFKKDWTNAEHKQI-SDYYGVIQDAFDLKLAVTILR 482
           ++Q  GLG L PNI+++ + + W      QI S +  +I D      AV I++
Sbjct: 642 IVQTMGLGNLKPNIVVMRYPEIWRRENLTQIPSTFVSIINDCITANKAVVIVK 694



 Score = 41.5 bits (93), Expect = 0.002
 Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 24/192 (12%)

Query: 592 KQY--VDAWWLYEDGGLNILLPYIIARRGYKHKLPLRIFAITKEQHKREFENKCMESLLK 649
           +QY  +D +W+  DGGL +LL  ++  +       +++F I +E  + E     ++  L 
Sbjct: 705 RQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKADVKKFLY 764

Query: 650 KFRIEYTELTLVRGIGDAPPE--------------SSWKMFNNIINDFK---SEEKTDIL 692
             R++   + +     +A P+              S+       I+  K     E+  ++
Sbjct: 765 DLRMQADVIVVTVKSWEADPDRSGGSKKDDPEVYRSAQSRIRTYISQLKEAAERERRPLM 824

Query: 693 TSEAELKSQYSKTS----XXXXXXXXXXQHSTKAAIVIITL-PLPRKVSASLYMAWLEVL 747
               ++     K                +HS  A +V+++L P P    A  YM ++++L
Sbjct: 825 EGGKQVVVDEQKVEKFLYTMLKLNATILRHSRMAVVVLVSLPPPPLNHLAYCYMEYMDLL 884

Query: 748 SRDLPPVLFVRG 759
             ++P +L VRG
Sbjct: 885 VENIPRILIVRG 896


>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
          Length = 601

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSY 197
           F+  AV F A  G  A + +  + ++PA  IP G + A+A++  +Y
Sbjct: 273 FAASAVLFFAYVGFDAVSTMAEETRDPARDIPAGLVGAMAVTTAAY 318


>10_08_0748 - 20277623-20277736,20277956-20279425
          Length = 527

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 547 NETSSSEQNPESIGGEALRSANFSRTSRRKLSNGALSFRALSFNCKQYVDAWW 599
           N +S S  +P       +RSA+ + T  R ++ G  +  AL  + K+Y+  WW
Sbjct: 80  NGSSPSSSSPPPTPVRPMRSADEAPTGLRHIAFGIGASSALWKSRKEYIKLWW 132


>11_04_0195 -
           14725553-14725571,14725988-14726079,14727214-14727335,
           14727588-14727597,14727798-14727896,14728046-14728612
          Length = 302

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 550 SSSEQNPESIGGEALRSANFSRTSRRKLSNGALSF--RALSFNCKQYVD 596
           +S   +P +  GEAL   +  +T  +K++ G ++F  R L F+CK + D
Sbjct: 198 ASCHHSPTTAAGEALVQQSGGQT--KKINEGTVNFQSRGLPFSCKDHCD 244


>11_03_0004 + 8869629-8870774
          Length = 381

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 177 NPAVAIPKGTLLALAISVTSYFTMVILSGMGALRDASGNVANLTTAALESCKPHCGYGL 235
           NP V       L+  ++ + Y  +V L+G+  L D + N   ++ A+L+S   +C  G+
Sbjct: 58  NPKVYKEHANCLSKLLARSPYLNLVSLAGLTELPDTALNQLRISGASLQSLSFYCCSGI 116


>03_05_0456 - 24498212-24499581,24502660-24503071
          Length = 593

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 152 FSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTMVI 202
           F+  AV F A  G  A + +  + ++PA  IP G + A+A++   Y  + +
Sbjct: 270 FAASAVLFFAYIGFDAVSTMAEETRDPARDIPVGLVGAMALTTALYCALAV 320


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,306,389
Number of Sequences: 37544
Number of extensions: 706910
Number of successful extensions: 1491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1473
Number of HSP's gapped (non-prelim): 16
length of query: 767
length of database: 14,793,348
effective HSP length: 88
effective length of query: 679
effective length of database: 11,489,476
effective search space: 7801354204
effective search space used: 7801354204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)

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