GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001473-TA|BGIBMGA001473-PA|IPR004841|Amino acid
permease-associated region
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)             228   1e-59
SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)             156   7e-38
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)             121   3e-27
SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3)                      49   1e-05
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   6e-04
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.16 
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   2.0  
SB_2517| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   4.6  

>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score =  228 bits (558), Expect = 1e-59
 Identities = 118/308 (38%), Positives = 173/308 (56%), Gaps = 16/308 (5%)

Query: 7   GGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIGFCDSLNHLLKTHGLKIVDNDVND 66
           GG YYL+SRSLG EFG S+GI+F+ A+AVA +M  +GF +++  LLK +G  IVD +VND
Sbjct: 88  GGAYYLISRSLGPEFGGSIGIIFSIASAVAVAMYVVGFAETVRDLLKENGALIVD-EVND 146

Query: 67  IRIVGAVALLVMCVICAIGMDWETKAQNFLXXXXXXXXXXXXXGALIGPSSDVERAKGFV 126
           +RI+G + ++ +  +  +G+ W  + Q  L             G  IGP +   +A+GF+
Sbjct: 147 VRIIGLITIVFILAVALVGLKWVVRTQVILLAVLIISILDVIIGTFIGPQNASSKAQGFL 206

Query: 127 GINLQTIRENWLPNFRYSEGREHDFFSVFAVYFPAVTGVQAGANICGDLKNPAVAIPKGT 186
           G      + N++P+FR  EG    FFSVFA++FPA TG+ AG NI GDLKNP  A+PKGT
Sbjct: 207 GYQDGVFQTNFMPDFR-GEG----FFSVFAIFFPAATGILAGVNISGDLKNPHTAVPKGT 261

Query: 187 LLALAISVTSYFTMVILSGMGALRDASGNVANL---------TTAALESCKP-HCGYGLH 236
           LLA+ +S   Y  +  L G    RDA+G V ++            ++ +C    C +GL+
Sbjct: 262 LLAILVSSLVYIVLAWLIGATYARDATGLVMSVAVVNGSSQSNVTSIPTCDTMKCLFGLY 321

Query: 237 NNYAIMQLMSAWGPFIYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKPYGR 296
            +   MQ  S WGP + AG +              P+  QA+  D+++P + +F   YG 
Sbjct: 322 FDNQAMQKASGWGPIVTAGIFASTLSSAIASIVGAPKTFQAVCKDKLFPKIDYFGVGYGP 381

Query: 297 HGEPYRGY 304
             EP RGY
Sbjct: 382 GNEPKRGY 389



 Score = 99.5 bits (237), Expect = 9e-21
 Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 15/184 (8%)

Query: 587 LSFNCKQY--VDAWWLYEDGGLNILLPYIIARRGYKHKLPLRIFAI-TKEQHKREFENKC 643
           L+F  KQ   +D WWLY+DGGL ILLPY++          LR+F +  + +H  + +   
Sbjct: 696 LAFEGKQRGTIDVWWLYDDGGLTILLPYLLTLHRLWRSCDLRLFYLDIRSKHAIKADQLK 755

Query: 644 MESLLKKFRIEYTELTLVRGIGDAPPESSWKMFNNIINDFKSEEKTDILTSEAELKSQYS 703
           M +L+KKFRI+ + +  V G   AP   S   F  +       E  D    +        
Sbjct: 756 MANLMKKFRIQVSSVVQVPGANTAPSGESLDAFRALP---VGRELDDGPIDD-------K 805

Query: 704 KTSXXXXXXXXXXQHSTKAAIVIITLPLP--RKVSASLYMAWLEVLSRDLPPVLFVRGND 761
           K            + S  A +V+I+LP+P     +  +YM+WLE+LS+DLPPVL VRGN 
Sbjct: 806 KVLRTIRIGELVRKRSNNAKLVVISLPVPVAEMTTPLMYMSWLEMLSKDLPPVLLVRGNQ 865

Query: 762 SCVL 765
             VL
Sbjct: 866 RSVL 869



 Score = 60.9 bits (141), Expect = 4e-09
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 319 VSWGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLAGTPLQRPALIDVAHMLTKIG 378
           V+WGSS +   Y   + F T L     H +++ PQ LVL+G P +RP L+ +A  LTK  
Sbjct: 521 VNWGSSGQANTYMSALRFTTLLDTHEEHVKNFRPQCLVLSGRPAERPDLMYIASQLTKNS 580

Query: 379 SFMIVADITDTALTKGERVSRQHIGE--QFVKYRKLRAFYVLLQGLDLKRGANALMQASG 436
             M+  ++      K +++S     E  +++K  K++AF        L+ G   L    G
Sbjct: 581 GLMMYGNV---CRQKFDKISDDEEREDAKWLKEHKIKAFRATTTAHSLRTGIAPLADLEG 637


>SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)
          Length = 420

 Score =  156 bits (378), Expect = 7e-38
 Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 30/219 (13%)

Query: 7   GGVYYLVSRSLGAEFGASVGILFAFANAVAASMNTIGFCDSLNHLLKTHGLKIVDNDVND 66
           GG YYL+SRSLG EFG S+G++F+ ANAVA ++  +GF +++  +L+ +G  I+D +VND
Sbjct: 205 GGAYYLISRSLGPEFGGSIGLIFSLANAVAVALYVVGFAETVRDILRENGSLIID-EVND 263

Query: 67  IRIVGAVALLVMCVICAIGMDW-------------------------ETKAQNFLXXXXX 101
           IR++G +++L +  +  IG++W                         + + Q  L     
Sbjct: 264 IRVIGVISVLALLAVTLIGLEWVSSRIRTLNRRSRLFKLHYINLNRRDVRTQMVLLGILL 323

Query: 102 XXXXXXXXGALIGPSSDVERAKGFVGINLQTIRENWLPNFRYSEGREHDFFSVFAVYFPA 161
                   G+ IGP   +  A+G VG+N +T   N LP++R  E     FFSVFAV+FPA
Sbjct: 324 ISIVDAIVGSFIGPQDKLSVAQGIVGLNAKTFTTNLLPDYRPGE----HFFSVFAVFFPA 379

Query: 162 VTGVQAGANICGDLKNPAVAIPKGTLLALAISVTSYFTM 200
            TG+ AG NI GDLK+   AIPKGTL A+ +S   Y  +
Sbjct: 380 ATGILAGVNISGDLKDAQKAIPKGTLWAILLSTLVYIAL 418


>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score =  121 bits (291), Expect = 3e-27
 Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 6/166 (3%)

Query: 318 DVSWGSSTEGQRYQDTVSFITELSHRVTHSRSYNPQLLVLAGTPLQRPALIDVAHMLTKI 377
           +V+WGSS +   Y   + F   L++   H +++ PQ LVL G P  RP L  +   +TK 
Sbjct: 163 EVNWGSSAQAFTYIQALRFAYRLNNTEDHVKNFRPQCLVLTGAPSSRPNLTYIVSQITKN 222

Query: 378 GSFMIVADITDTALTKGERVSRQHIGEQFVKYRKLRAFYVLLQGLDLKRGANALMQASGL 437
              M+   +   +L +   V  +   + +++ RK+RAF+ +     L+ G  +L+Q +GL
Sbjct: 223 VGLMVCGQVNVGSLCQ---VKSE---KDWLRERKIRAFHTVCSAASLRDGVQSLLQTAGL 276

Query: 438 GKLSPNILLIGFKKDWTNAEHKQISDYYGVIQDAFDLKLAVTILRV 483
           GKL PN L+IGFK++W  A H ++ +Y  +I DAF+L   V ILRV
Sbjct: 277 GKLKPNTLVIGFKRNWMRAPHSEVEEYVNIINDAFELNYGVAILRV 322



 Score =  111 bits (267), Expect = 2e-24
 Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 17/200 (8%)

Query: 571 RTSRRKLSNGALS-FRALSFNCKQY--VDAWWLYEDGGLNILLPYIIARRGYKHKLPLRI 627
           +TS+ + S+   S  R+++F  KQ   VD WWL++DGGL IL+PY++          LRI
Sbjct: 575 QTSQVRFSSEPSSTLRSVTFKGKQKGTVDVWWLFDDGGLTILIPYLLTLHSLWKGCRLRI 634

Query: 628 FAITKEQHKREFENKCMESLLKKFRIEYTELTLVRGIGDAPPESSWKMFNNIINDFKSEE 687
           F       K   E + M +LLKKFRI+++ + +V GI  AP   S       + DF+   
Sbjct: 635 FTPGSSNIKNN-EIR-MANLLKKFRIDFSSIEVVHGIDKAPSNKS-------VQDFRRLP 685

Query: 688 KTDILTSEAELKSQYSKTSXXXXXXXXXXQHSTKAAIVIITLPLPRK--VSASLYMAWLE 745
             + L    +L  +  +            QHS  A ++++TLP+P+   +S  +YM+WLE
Sbjct: 686 IKEELDEGVQLDKRILRQ---IRIGELLRQHSKDARLIVMTLPVPKPTLMSPLMYMSWLE 742

Query: 746 VLSRDLPPVLFVRGNDSCVL 765
           VLS DLPPV  +RGN + VL
Sbjct: 743 VLSADLPPVFLIRGNQTSVL 762



 Score = 46.8 bits (106), Expect = 7e-05
 Identities = 22/63 (34%), Positives = 29/63 (46%)

Query: 242 MQLMSAWGPFIYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKPYGRHGEPY 301
           M+ MSAWGP +  G +              P+  QAL  D I+P + +F    G   EP 
Sbjct: 1   MEKMSAWGPLVTCGIFAATLSSALASLVGAPKTFQALCKDNIFPYIGYFGIGVGPGEEPR 60

Query: 302 RGY 304
           RGY
Sbjct: 61  RGY 63


>SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3)
          Length = 266

 Score = 49.2 bits (112), Expect = 1e-05
 Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 4/79 (5%)

Query: 11  YLVSRSLGAEFGASVGILFAFANAVAASMNTIGFCDS-LNHLLKTHGLKIVDNDVND--I 67
           Y++SR+LG EFG ++GI+F FAN  A+++  +GF ++ LN+      L  +++       
Sbjct: 43  YMISRTLGPEFGGAIGIIFFFANVFASALYVLGFVEALLNNFGPRGSLAHIESFHQGYWY 102

Query: 68  RIVGAVALLVMCV-ICAIG 85
           + +   A+L++C+ +C IG
Sbjct: 103 QFLYGSAILMLCLAVCMIG 121


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 43.6 bits (98), Expect = 6e-04
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 407 VKYRKLRAFYVLLQGLDLKRGANALMQASGLGKLSPNILLIGFKKDWTNAE 457
           +K  K++ F  ++   ++K+G + L+Q SGLG L PN +L+ F ++W   E
Sbjct: 528 MKEEKVKGFMKIVTSENVKQGISFLIQGSGLGGLDPNTVLLAFPENWRERE 578


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 35.5 bits (78), Expect = 0.16
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 164 GVQAGANICGDLKNPAVAIPKGTLLAL 190
           GV +G N+ GDLK+P+  IP GTL AL
Sbjct: 148 GVLSGINMSGDLKDPSSNIPAGTLAAL 174


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 391 LTKGERVSRQHIGEQFVKYRKLRAFYVLLQGLDLKRGAN 429
           LT    VS  H+ ++F+K ++ R   +LLQGL + +G +
Sbjct: 114 LTNDAEVSGGHLPKEFLKAKRTRKVSLLLQGLTVSKGCH 152


>SB_2517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 560 GGEALRSANFSRTSRRKLSNGALSFRALS-FNCKQYVDAWWLYEDGGLNILLPY 612
           G EA+  A+  RTS   L    +SFR  S FN   ++  W  +  GG N+L+ +
Sbjct: 82  GSEAVTHADQLRTSPSYLK---ISFRNTSTFNESNFIFVWMYFRFGGANVLVEF 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,784,518
Number of Sequences: 59808
Number of extensions: 773202
Number of successful extensions: 1684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1656
Number of HSP's gapped (non-prelim): 18
length of query: 767
length of database: 16,821,457
effective HSP length: 88
effective length of query: 679
effective length of database: 11,558,353
effective search space: 7848121687
effective search space used: 7848121687
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)