Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001472-TA|BGIBMGA001472-PA|IPR004842|Na-K-Cl
cotransporter superfamily, IPR002443|Na-K-Cl co-transporter,
IPR004841|Amino acid permease-associated region
(1036 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 169 8e-42
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 168 2e-41
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 40 0.014
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 36 0.13
12_01_0378 - 2946916-2947590 31 3.6
04_04_0676 - 27187778-27188316,27188441-27188530,27189249-271894... 31 3.6
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 31 6.3
05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019... 30 8.4
04_03_0866 + 20407242-20407575,20407665-20407724,20408298-204083... 30 8.4
01_01_1064 + 8393519-8394475 30 8.4
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 169 bits (412), Expect = 8e-42
Identities = 101/305 (33%), Positives = 171/305 (56%), Gaps = 30/305 (9%)
Query: 96 LITEEGVLIPCLLNIWGVMLFLRISWVVSQAGIGWSLVIIALSAVVCVITTLSMSAICTN 155
L T GV +PCL NI G++ ++R +W+V G+ SLV++A +TT+S+SAI TN
Sbjct: 65 LDTMMGVFVPCLQNILGIIYYIRFTWIVGMGGVWQSLVLVAFCGSCTFLTTISLSAIATN 124
Query: 156 GEVKGGGIYYIISRSLGPEFGASVGIIFAFANAVAASMNTIGFCDSMNHLLKSLD----- 210
G +KGGG YY+I R+LGPE G S+G+ F NAVA +M +G ++ + S +
Sbjct: 125 GAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLDAVPSAEFFQES 184
Query: 211 LQIIDNSY-----------------NDVRIIGAIALFVMCVICAVGMDWESK-AQNFLIA 252
+ ++ N++ +D+++ G I ++C I G+ +K A FLI
Sbjct: 185 VTVVTNTFVNGTAAGNATTISTPNLHDLQVYGIIVTILLCFIVFGGVKIINKVAPAFLIP 244
Query: 253 IIVGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFVENFNSDFKYSE--GMEQNFFSVFA 310
++ +I+ +G + P+ N ++ GLS +T +N++SD++ + G+ ++
Sbjct: 245 VLF-SILCIYIGVFIAPRPN--ASKWITGLSITTLKDNWSSDYQRTNNAGVPDPNGALLG 301
Query: 311 IFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSYAMMVLFTGAAALRDASGNI 370
++FP+VTGI AG+N S LKD +IP GTL A + + + Y + V GA + R+ G +
Sbjct: 302 LYFPAVTGIMAGSNRSASLKDTQRSIPIGTLHATISTTMMYLLSVFLFGALSTRE--GLL 359
Query: 371 TDLVI 375
TD ++
Sbjct: 360 TDRLL 364
Score = 113 bits (272), Expect = 7e-25
Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 22/317 (6%)
Query: 438 PRLIQALGVDRIYPGLIFFSKPYGRHGEAYRGYXXXXXXXXXXXXIAKLNAIAPLISNFY 497
PRL+ A+ D I P L +F G E + I L+ I P I+ F+
Sbjct: 389 PRLLAAIANDDILPVLNYFKAYEG--SEPHVATLFTSFICISCVIIGNLDVITPTITMFF 446
Query: 498 LASYALINFCTFHAALVRPLGWRPTFKYYNVWVSLAGFLMCVGIMLLISWIMSLVTIAIF 557
L YA +N F L+ WRP +K ++ +SL G L+C+ IM +ISW ++V++A+
Sbjct: 447 LLCYAGVNLSCFLLDLLDAPSWRPRWKLHHWSLSLIGALLCIVIMFMISWTFTVVSLALA 506
Query: 558 FTLYLIVHYRNPDVNWGSSTQAQMYKTALSSAHNLARTGEHVKNYWPQLLV-------LG 610
+Y V + +WG ++ ++ AL S ++ H KN++P L+ L
Sbjct: 507 SLIYYYVSLKGKAGDWGDGFKSAYFQLALRSLRSMGANQVHPKNWYPIPLIFCRPWGKLP 566
Query: 611 GRAHARPPLVDLGSLITKAGSLMII------GDISKEKLSYKVCSARARADNEWLQERKV 664
P L D + + K G M I GD + K + A ++ R+
Sbjct: 567 EDVPCHPKLADFANCMKKKGRGMSIFVSIIDGDYHESAEDAKTACRQLSA---YIDYRRC 623
Query: 665 RAFCSLVHGFNFEQGARALIQATGVGKLAPNVLLMGYKSDWTTASAEDLVAYF-NVLHTA 723
++ + G R+++Q G+G L PN+++M Y W + + + F ++++
Sbjct: 624 EGVAEIIVAPSTSIGFRSIVQTMGLGNLKPNIVVMRYPEIWRRENLTQIPSTFVSIINDC 683
Query: 724 FENRLAVAIVRVRGGLD 740
AV IV+ GLD
Sbjct: 684 ITANKAVVIVK---GLD 697
Score = 39.1 bits (87), Expect = 0.018
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 974 LRLRELLLANSRDSRLIVMSLPMPRKGSVSAPLYMAWLEMMSRDLPPMLFVRGNHTSVLT 1033
L+L +L +SR + ++++SLP P + A YM +++++ ++P +L VRG V+T
Sbjct: 845 LKLNATILRHSRMAVVVLVSLPPPPLNHL-AYCYMEYMDLLVENIPRILIVRGYRRDVVT 903
Query: 1034 FYS 1036
++
Sbjct: 904 LFT 906
Score = 38.3 bits (85), Expect = 0.032
Identities = 12/40 (30%), Positives = 29/40 (72%)
Query: 853 KQESGTVDVWWLYDDVGLTILLPYIISQRSAWGNCKLRIF 892
+++ GT+D++W+ D GL +LL ++ + ++ +CK+++F
Sbjct: 704 QRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVF 743
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 168 bits (408), Expect = 2e-41
Identities = 102/300 (34%), Positives = 163/300 (54%), Gaps = 35/300 (11%)
Query: 98 TEEGVLIPCLLNIWGVMLFLRISWVVSQAGIGWSLVIIALSAVVCVITTLSMSAICTNGE 157
T GV +PCL NI G++ ++R +W+V AG+ SLV+++ +T +S+SAI TNG
Sbjct: 61 TMMGVFVPCLQNILGIIYYIRFTWIVGMAGVWQSLVLVSFCGACTFLTGISLSAIATNGA 120
Query: 158 VKGGGIYYIISRSLGPEFGASVGIIFAFANAVAASMNTIGFCDSMNHLLKSL-----DLQ 212
+KGGG YY+I R+LGPE G S+G+ F NAVA SM +G ++ + S +
Sbjct: 121 MKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGSMYVLGAVETFLDAVPSAGFFKESVT 180
Query: 213 IIDN-----------------SYNDVRIIGAIALFVMCVICAVGMDWESK-AQNFLIAII 254
+++N S +D+++ G I ++C I G+ +K A FLI ++
Sbjct: 181 VVNNTLVNGTATASTATISTPSLHDLQVYGVIVTILLCFIVFGGVKIINKVAPAFLIPVL 240
Query: 255 VGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFVENFNSDFKYSE---------GMEQNF 305
+++ +G + P+ N +G GLS +TF +N+ S+++ + + +F
Sbjct: 241 F-SLLCIYLGVFIAPRHN--APKGITGLSITTFKDNWGSEYQRTNNAGVPDPNGSIYWDF 297
Query: 306 FSVFAIFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSYAMMVLFTGAAALRD 365
++ +FFP+VTGI AG+N S LKD +IP GTL A L + Y VL GA A R+
Sbjct: 298 NALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLSATLTTTAMYLFSVLLFGALATRE 357
Score = 122 bits (293), Expect = 2e-27
Identities = 88/335 (26%), Positives = 151/335 (45%), Gaps = 18/335 (5%)
Query: 418 IYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKPYGRHGEAYRGYXXXXXXX 477
IY G PRL+ A+ D I P L +F G E +
Sbjct: 377 IYIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVSEG--AEPHSATLFTAFIC 434
Query: 478 XXXXXIAKLNAIAPLISNFYLASYALINFCTFHAALVRPLGWRPTFKYYNVWVSLAGFLM 537
I L+ I P I+ F+L YA +N F L+ WRP +K+++ +SL G L+
Sbjct: 435 ICCVVIGNLDLITPTITMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALL 494
Query: 538 CVGIMLLISWIMSLVTIAIFFTLYLIVHYRNPDVNWGSSTQAQMYKTALSSAHNLARTGE 597
CV IM LISW ++V++A+ +Y V + +WG ++ ++ AL S +L
Sbjct: 495 CVVIMFLISWSFTVVSLALASLIYYYVSLKGKAGDWGDGFKSAYFQLALRSLRSLGANQV 554
Query: 598 HVKNYWPQLLV-------LGGRAHARPPLVDLGSLITKAG---SLMI-IGDISKEKLSYK 646
H KN++P L+ L P L D + + K G S+ + I D +L+
Sbjct: 555 HPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSIIDGDYHELAED 614
Query: 647 VCSARARADNEWLQERKVRAFCSLVHGFNFEQGARALIQATGVGKLAPNVLLMGYKSDWT 706
+A + D +++ ++ ++ + +G R+++Q G+G L PN+++M Y W
Sbjct: 615 AKTACRQLDT-YIEYKRCEGVAEIIVAPSMSEGFRSIVQTMGLGNLKPNIIVMRYPEIWR 673
Query: 707 TASAEDLVAYF-NVLHTAFENRLAVAIVRVRGGLD 740
+ + + F ++++ AV IV+ GLD
Sbjct: 674 RENLIQIPSTFVSIINDCIIANKAVVIVK---GLD 705
Score = 54.0 bits (124), Expect = 6e-07
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 853 KQESGTVDVWWLYDDVGLTILLPYIISQRSAWGNCKLRIFXXXXXXXXXXXXXXXXXXXX 912
+++ GT+D++W+ D GL +LL ++ + + +CK+++F
Sbjct: 712 QRQYGTIDLYWIVRDGGLMLLLSQLLLTKETFESCKIQVFCIAEEDTDAEELKADVKKFL 771
Query: 913 SKFRIDYSSLTMVQDITEP--PQAETKALFDETIKKFTSDSAAPECRISETELTTL---- 966
R+ + + EP + + A D++ + +TS +SE + T
Sbjct: 772 YDLRMHAEVIVVTMKSWEPHMESSSSGAPQDDSQEAYTSAQRRISTYLSEMKETAQREGH 831
Query: 967 ----SGK---TNRQ---------LRLRELLLANSRDSRLIVMSLPMPRKGSVSAPLYMAW 1010
GK N Q +L +L SR + ++++SLP P A YM +
Sbjct: 832 PLMEDGKQVVVNEQKIEKFLYTMFKLNSTILRYSRMAAVVLVSLPPPPLNH-PAYFYMEY 890
Query: 1011 LEMMSRDLPPMLFVRGNHTSVLTFYS 1036
++++ ++P ML VRG V+TF++
Sbjct: 891 MDLLVENVPRMLIVRGYRRDVVTFFT 916
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 39.5 bits (88), Expect = 0.014
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 30/227 (13%)
Query: 136 ALSAVVCVITTLSMSAICTNGEVKGGGIYYIISRSLGP--EFGASVGII--FAFANAVAA 191
A+S V +++ L + V GG Y+ LG F A+ I+ + A A
Sbjct: 117 AVSGVSAMLSVLCYTEFAIEIPVAGGSFAYL-RVELGDFVAFIAAGNILLEYCIGGAAVA 175
Query: 192 SMNTIGFCDSMNHLLKSLDLQIIDNSYN-DVRIIGAIALFVMCVICAVGMDWESKAQ--- 247
T F +NH + D +I S D + IA+ V+ V+CA+ + +KA
Sbjct: 176 RAWTSYFATLLNH--RPNDFRIHAASLAADYSRLDPIAVAVIAVVCALSV-LSTKASSRF 232
Query: 248 NFLIAIIVGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFVENFNSDFKYSEGMEQNFFS 307
N+ ++I A++ F+V A GLS + + N +DF + + F+
Sbjct: 233 NYALSIAHLAVLVFIVTA---------------GLSRAR-LSNLTADF--APFGARGVFA 274
Query: 308 VFAIFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSYAMM 354
A+ F + G A + ++ + +DPA IP G + A+ ++ +Y +
Sbjct: 275 ASAVLFFAYVGFDAVSTMAEETRDPARDIPAGLVGAMAVTTAAYCAL 321
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 36.3 bits (80), Expect = 0.13
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 17/108 (15%)
Query: 540 GIMLLISWIMSLVTIAIFFTLYLIVHYRNPDVNWGSSTQAQMYKTALSSAHNLARTG--- 596
G++L+ W + VT + F YL V Y NWGSS+ + L S+ N A G
Sbjct: 365 GLLLMYEW--TSVTFFLLFGSYLRVVY-----NWGSSSANHVGHNNLDSSENHAGAGLQR 417
Query: 597 ------EHVKNYWPQLLVLGGRAHARPPLVDLGSLITKAGSLMIIGDI 638
YW + +L A P ++ + +L K G LM+ G +
Sbjct: 418 NTSDCDTDAAFYWSGMAILSSIALLSPTVLGITALFAKLG-LMVAGGV 464
>12_01_0378 - 2946916-2947590
Length = 224
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 532 LAGFLMCVGIMLLISW-------IMSLVTIAIFFTLYLIVHYRNPDVNWGSSTQAQMYKT 584
L FL+C+G+ +LI W I + V A L ++V RN + G S Y+
Sbjct: 16 LCAFLVCIGVAVLIYWATYQPHRIRAAVESAELSNLTVVV--RNGTADGGGSGGVVYYRL 73
Query: 585 ALS-SAHN-LARTGEHVKNYWPQLLVL 609
A++ + +N R G H P+LL+L
Sbjct: 74 AVNVTMYNPSGRAGVHYDAIRPRLLLL 100
>04_04_0676 -
27187778-27188316,27188441-27188530,27189249-27189480,
27189569-27189899,27190369-27190591,27190772-27191132
Length = 591
Score = 31.5 bits (68), Expect = 3.6
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 310 AIFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSYAMMVL 356
AI + S G + + ++ +++DPA A+P G ++L+ Y +M L
Sbjct: 249 AIVYFSYIGYDSASTMAEEIRDPARALPVGIAGSVLVVSALYCLMSL 295
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 30.7 bits (66), Expect = 6.3
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 496 FYLASYALINFCTFHAALVRPLGWRPTFKYYNVWVSLA-GF--LMCVGI------MLLIS 546
FY S + ++ LV P+ +RP + Y + V A G LMC +
Sbjct: 405 FYCNSVSFMSSIALIILLVNPILYRPAIRSYALSVCTAVGMFALMCAYAAGSTQHLKTSI 464
Query: 547 WIMSLVTIAIFFTLYLIVHYRNPDVNWGS-STQAQMYKT 584
+I LV + +F + +++ + + DVN GS ST + +T
Sbjct: 465 YIFGLVALVLFIMILVLICFYHRDVNTGSMSTNEEDLET 503
>05_07_0288 +
29001228-29001399,29001493-29001723,29001817-29001914,
29002687-29002873,29003068-29003198,29003282-29003908
Length = 481
Score = 30.3 bits (65), Expect = 8.4
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 127 GIGWSLVIIALSAVVCV--ITTLSMSAICTNGEVKGGGIYYIISRSLGPEFGASVGIIFA 184
G+GW+L ++AL+AV V MS + + E G +I R L + S G +F
Sbjct: 85 GMGWALGLVALTAVAAVTFYAYYLMSRVLDHCEAHGR--RHIRFRELAADVLGS-GWVFY 141
Query: 185 FANAVAASMNTIGFCDSMNHLLKSLD-LQIIDNSYNDVRIIGAIALFVMCVICAVGMDWE 243
V ++N G ++ +L + D LQI+ Y+D+ G + L+ ++ AV +
Sbjct: 142 LVVTVQTAINA-GI--TIGSILLAADCLQIM---YSDLAPNGPLKLYHFIIVVAVVLSLL 195
Query: 244 SKAQNF 249
S+ +F
Sbjct: 196 SQLPSF 201
>04_03_0866 +
20407242-20407575,20407665-20407724,20408298-20408351,
20408465-20408637,20408779-20408965,20409098-20409243,
20409316-20409470,20409888-20409969,20410073-20410188,
20410996-20411091,20411549-20411672,20412252-20412325,
20412820-20413068,20413527-20413738,20414170-20414381
Length = 757
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 832 NAANGIELSKDQLTQMSIFKRKQESGTVDVWWLYDDVGLTILLPYIISQRSAW 884
+ +N + SK L + + Q + T ++W LYD V ++L ++ Q AW
Sbjct: 461 DVSNSVSRSKFTLQRRLRVRTIQYNITANIWDLYDFVDPDVVLTILVHQSVAW 513
>01_01_1064 + 8393519-8394475
Length = 318
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 931 PPQAETKALFDETIKKFTSDSAAPECRISETELTTLSGKTNRQLRLRELLLANSRDS 987
PP++ A E F S S++ S + ++ + T R++ LR+LLL ++ +S
Sbjct: 164 PPRSPHLAKIAEPSDSFASSSSSSTSTSSSSSSSSSAKSTRRRISLRDLLLGSTANS 220
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,590,186
Number of Sequences: 37544
Number of extensions: 999317
Number of successful extensions: 2285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2264
Number of HSP's gapped (non-prelim): 20
length of query: 1036
length of database: 14,793,348
effective HSP length: 89
effective length of query: 947
effective length of database: 11,451,932
effective search space: 10844979604
effective search space used: 10844979604
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)
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