Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001472-TA|BGIBMGA001472-PA|IPR004842|Na-K-Cl
cotransporter superfamily, IPR002443|Na-K-Cl co-transporter,
IPR004841|Amino acid permease-associated region
(1036 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 476 e-134
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) 278 2e-74
SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29) 174 4e-43
SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3) 60 7e-09
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-04
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.003
SB_16238| Best HMM Match : Nucleos_tra2_C (HMM E-Value=0.71) 33 1.6
SB_29563| Best HMM Match : IncA (HMM E-Value=0.37) 32 2.1
SB_5731| Best HMM Match : OAR (HMM E-Value=2.8) 32 2.1
SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.8
SB_7380| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.8
SB_42509| Best HMM Match : DUF533 (HMM E-Value=0.14) 32 2.8
SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.6
SB_17284| Best HMM Match : IncA (HMM E-Value=0.24) 31 4.8
SB_15314| Best HMM Match : DoxX (HMM E-Value=0.17) 31 4.8
SB_18435| Best HMM Match : Beta_elim_lyase (HMM E-Value=7.1) 31 4.8
SB_27647| Best HMM Match : IncA (HMM E-Value=0.78) 31 6.4
SB_5590| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.4
SB_4044| Best HMM Match : IncA (HMM E-Value=0.44) 30 8.4
>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 476 bits (1174), Expect = e-134
Identities = 258/620 (41%), Positives = 356/620 (57%), Gaps = 40/620 (6%)
Query: 100 EGVLIPCLLNIWGVMLFLRISWVVSQAGIGWSLVIIALSAVVCVITTLSMSAICTNGEVK 159
+GV CLLNIWGVML+LR+SWVV QAGIG + VII LSAVV +TTLSMSAICTNGEVK
Sbjct: 27 KGVFFGCLLNIWGVMLYLRLSWVVGQAGIGLATVIIMLSAVVTTVTTLSMSAICTNGEVK 86
Query: 160 GGGIYYIISRSLGPEFGASVGIIFAFANAVAASMNTIGFCDSMNHLLKSLDLQIIDNSYN 219
GGG YY+ISRSLGPEFG S+GIIF+ A+AVA +M +GF +++ LLK I+D N
Sbjct: 87 GGGAYYLISRSLGPEFGGSIGIIFSIASAVAVAMYVVGFAETVRDLLKENGALIVDE-VN 145
Query: 220 DVRIIGAIALFVMCVICAVGMDWESKAQNFLIAIIVGAIVDFVVGAVMGPKSNLEVAEGF 279
DVRIIG I + + + VG+ W + Q L+A+++ +I+D ++G +GP++ A+GF
Sbjct: 146 DVRIIGLITIVFILAVALVGLKWVVRTQVILLAVLIISILDVIIGTFIGPQNASSKAQGF 205
Query: 280 VGLSTSTFVENFNSDFKYSEGMEQNFFSVFAIFFPSVTGIQAGANISGDLKDPASAIPKG 339
+G F NF DF+ EG FFSVFAIFFP+ TGI AG NISGDLK+P +A+PKG
Sbjct: 206 LGYQDGVFQTNFMPDFR-GEG----FFSVFAIFFPAATGILAGVNISGDLKNPHTAVPKG 260
Query: 340 TLLALLISMVSYAMMVLFTGAAALRDASGNITDLVISNGTVTNYSAVSQCANSTLFPCKY 399
TLLA+L+S + Y ++ GA RDA+G + + + NG+ + S V+ C +
Sbjct: 261 TLLAILVSSLVYIVLAWLIGATYARDATGLVMSVAVVNGS--SQSNVTSIPTCDTMKCLF 318
Query: 400 GMHVDFEIMQLMSAWGPFIYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKP 459
G++ D + MQ S WGP + AG + P+ QA+ D+++P + +F
Sbjct: 319 GLYFDNQAMQKASGWGPIVTAGIFASTLSSAIASIVGAPKTFQAVCKDKLFPKIDYFGVG 378
Query: 460 YGRHGEAYRGYXXXXXXXXXXXXIAKLNAIAPLISNFYLASYALINFCTFHAALVRPLGW 519
YG E RGY I LNAIAP+ISNF+L YALIN+ TF A+L R GW
Sbjct: 379 YGPGNEPKRGYVLAFLIACAFTAIGDLNAIAPIISNFFLIVYALINYATFVASLGRSPGW 438
Query: 520 RPTFKYYNVWV-------------------SLAGFLMCVGIMLLISW-----------IM 549
RP+F++YN+WV +L ++ VG+ + +
Sbjct: 439 RPSFRFYNMWVSLIGALLCVAIMFLINWWAALVTIMIVVGLYKFVDYRKPNDNEIERDSF 498
Query: 550 SLVTIAIFFTLYLIVHYRN-PDVNWGSSTQAQMYKTALSSAHNLARTGEHVKNYWPQLLV 608
+ V + +FF + VNWGSS QA Y +AL L EHVKN+ PQ LV
Sbjct: 499 AFVNVPVFFVKVPNIKTEPFSQVNWGSSGQANTYMSALRFTTLLDTHEEHVKNFRPQCLV 558
Query: 609 LGGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVRAFC 668
L GR RP L+ + S +TK LM+ G++ ++K K+ R D +WL+E K++AF
Sbjct: 559 LSGRPAERPDLMYIASQLTKNSGLMMYGNVCRQKFD-KISDDEEREDAKWLKEHKIKAFR 617
Query: 669 SLVHGFNFEQGARALIQATG 688
+ + G L G
Sbjct: 618 ATTTAHSLRTGIAPLADLEG 637
Score = 125 bits (301), Expect = 2e-28
Identities = 74/188 (39%), Positives = 99/188 (52%), Gaps = 13/188 (6%)
Query: 850 FKRKQESGTVDVWWLYDDVGLTILLPYIISQRSAWGNCKLRIFXXXXXXXXXXXXXXXXX 909
F+ KQ GT+DVWWLYDD GLTILLPY+++ W +C LR+F
Sbjct: 698 FEGKQR-GTIDVWWLYDDGGLTILLPYLLTLHRLWRSCDLRLFYLDIRSKHAIKADQLKM 756
Query: 910 XXX-SKFRIDYSSLTMVQDITEPPQAETKALFDETIKKFTSDSAAPECRISETELTTLSG 968
KFRI SS+ V P E+ F A P R +
Sbjct: 757 ANLMKKFRIQVSSVVQVPGANTAPSGESLDAF----------RALPVGRELDDGPID-DK 805
Query: 969 KTNRQLRLRELLLANSRDSRLIVMSLPMPRKGSVSAPLYMAWLEMMSRDLPPMLFVRGNH 1028
K R +R+ EL+ S +++L+V+SLP+P + +YM+WLEM+S+DLPP+L VRGN
Sbjct: 806 KVLRTIRIGELVRKRSNNAKLVVISLPVPVAEMTTPLMYMSWLEMLSKDLPPVLLVRGNQ 865
Query: 1029 TSVLTFYS 1036
SVLTFYS
Sbjct: 866 RSVLTFYS 873
>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 278 bits (681), Expect = 2e-74
Identities = 140/333 (42%), Positives = 194/333 (58%), Gaps = 6/333 (1%)
Query: 408 MQLMSAWGPFIYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKPYGRHGEAY 467
M+ MSAWGP + G + P+ QAL D I+P + +F G E
Sbjct: 1 MEKMSAWGPLVTCGIFAATLSSALASLVGAPKTFQALCKDNIFPYIGYFGIGVGPGEEPR 60
Query: 468 RGYXXXXXXXXXXXXIAKLNAIAPLISNFYLASYALINFCTFHAALVRPLGWRPTFKYYN 527
RGY + LN IAP+ISNF+L SYALIN+ F A+L R GWRP+F+YYN
Sbjct: 61 RGYILTFIIAVGFVAVGNLNVIAPVISNFFLMSYALINYAVFAASLGRSPGWRPSFRYYN 120
Query: 528 VWVSLAGFLMCVGIMLLISWIMSLVTIAIFFTLYLIVHYRNPDVNWGSSTQAQMYKTALS 587
+WVSL G L+CV IM LI+W +LVTIAI +L+ V + P+VNWGSS QA Y AL
Sbjct: 121 MWVSLVGALLCVAIMFLINWWAALVTIAIIASLHKYVDIKKPEVNWGSSAQAFTYIQALR 180
Query: 588 SAHNLARTGEHVKNYWPQLLVLGGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKV 647
A+ L T +HVKN+ PQ LVL G +RP L + S ITK LM+ G ++ L
Sbjct: 181 FAYRLNNTEDHVKNFRPQCLVLTGAPSSRPNLTYIVSQITKNVGLMVCGQVNVGSL---- 236
Query: 648 CSARARADNEWLQERKVRAFCSLVHGFNFEQGARALIQATGVGKLAPNVLLMGYKSDWTT 707
+ +++ +WL+ERK+RAF ++ + G ++L+Q G+GKL PN L++G+K +W
Sbjct: 237 --CQVKSEKDWLRERKIRAFHTVCSAASLRDGVQSLLQTAGLGKLKPNTLVIGFKRNWMR 294
Query: 708 ASAEDLVAYFNVLHTAFENRLAVAIVRVRGGLD 740
A ++ Y N+++ AFE VAI+RVR D
Sbjct: 295 APHSEVEEYVNIINDAFELNYGVAILRVREEFD 327
Score = 143 bits (347), Expect = 6e-34
Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 14/186 (7%)
Query: 850 FKRKQESGTVDVWWLYDDVGLTILLPYIISQRSAWGNCKLRIFXXXXXXXXXXXXXXXXX 909
FK KQ+ GTVDVWWL+DD GLTIL+PY+++ S W C+LRIF
Sbjct: 594 FKGKQK-GTVDVWWLFDDGGLTILIPYLLTLHSLWKGCRLRIF--TPGSSNIKNNEIRMA 650
Query: 910 XXXSKFRIDYSSLTMVQDITEPPQAETKALFDETIKKFTSDSAAPECRISETELTTLSGK 969
KFRID+SS+ +V I + P +++++ F E E L +
Sbjct: 651 NLLKKFRIDFSSIEVVHGIDKAPS-------NKSVQDFRRLPIKEEL----DEGVQLDKR 699
Query: 970 TNRQLRLRELLLANSRDSRLIVMSLPMPRKGSVSAPLYMAWLEMMSRDLPPMLFVRGNHT 1029
RQ+R+ ELL +S+D+RLIVM+LP+P+ +S +YM+WLE++S DLPP+ +RGN T
Sbjct: 700 ILRQIRIGELLRQHSKDARLIVMTLPVPKPTLMSPLMYMSWLEVLSADLPPVFLIRGNQT 759
Query: 1030 SVLTFY 1035
SVLTFY
Sbjct: 760 SVLTFY 765
>SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)
Length = 420
Score = 174 bits (423), Expect = 4e-43
Identities = 94/219 (42%), Positives = 134/219 (61%), Gaps = 30/219 (13%)
Query: 158 VKGGGIYYIISRSLGPEFGASVGIIFAFANAVAASMNTIGFCDSMNHLLKSLDLQIIDNS 217
V GG YY+ISRSLGPEFG S+G+IF+ ANAVA ++ +GF +++ +L+ IID
Sbjct: 202 VPTGGAYYLISRSLGPEFGGSIGLIFSLANAVAVALYVVGFAETVRDILRENGSLIIDE- 260
Query: 218 YNDVRIIGAIALFVMCVICAVGMDWES-------------------------KAQNFLIA 252
ND+R+IG I++ + + +G++W S + Q L+
Sbjct: 261 VNDIRVIGVISVLALLAVTLIGLEWVSSRIRTLNRRSRLFKLHYINLNRRDVRTQMVLLG 320
Query: 253 IIVGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFVENFNSDFKYSEGMEQNFFSVFAIF 312
I++ +IVD +VG+ +GP+ L VA+G VGL+ TF N D++ E +FFSVFA+F
Sbjct: 321 ILLISIVDAIVGSFIGPQDKLSVAQGIVGLNAKTFTTNLLPDYRPGE----HFFSVFAVF 376
Query: 313 FPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSY 351
FP+ TGI AG NISGDLKD AIPKGTL A+L+S + Y
Sbjct: 377 FPAATGILAGVNISGDLKDAQKAIPKGTLWAILLSTLVY 415
>SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3)
Length = 266
Score = 60.5 bits (140), Expect = 7e-09
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 30/159 (18%)
Query: 165 YIISRSLGPEFGASVGIIFAFANAVAASMNTIGFCDS-MNHLLKSLDLQIIDNSYND--V 221
Y+ISR+LGPEFG ++GIIF FAN A+++ +GF ++ +N+ L I++ +
Sbjct: 43 YMISRTLGPEFGGAIGIIFFFANVFASALYVLGFVEALLNNFGPRGSLAHIESFHQGYWY 102
Query: 222 RIIGAIALFVMCV-ICAVGMDWESKAQNFLIAIIVGAIVDFVVGAVMGPKSNLEVAEGFV 280
+ + A+ ++C+ +C +G +K +F+I + AVM
Sbjct: 103 QFLYGSAILMLCLAVCMIGAGMFAKT-SFVIFL-----------AVM------------- 137
Query: 281 GLSTSTFVENFNSDFKYSEGMEQNFFSVFAIFFPSVTGI 319
+S S + F D+ E EQ + VFAI F VTGI
Sbjct: 138 -VSVSAALPKFTKDYTKDEHSEQTWLQVFAILFNGVTGI 175
>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 45.6 bits (103), Expect = 2e-04
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 634 IIGDISKEKLSYKVCSARARADNEWLQERKVRAFCSLVHGFNFEQGARALIQATGVGKLA 693
++ DI+ K + KVC ++E KV+ F +V N +QG LIQ +G+G L
Sbjct: 513 LVTDITSAKENLKVC----------MKEEKVKGFMKIVTSENVKQGISFLIQGSGLGGLD 562
Query: 694 PNVLLMGYKSDW 705
PN +L+ + +W
Sbjct: 563 PNTVLLAFPENW 574
Score = 40.3 bits (90), Expect = 0.008
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 528 VWVSLAGFLMCVGIMLLISWIMSLVTIAIFFTLYLIVHYRNPDVNWGSSTQAQMYKTALS 587
++ S G +C+ +M + SW +LV + I +Y + ++ WG + A
Sbjct: 157 MFTSFLGVCLCLALMFISSWYYALVAMIIAAAVYKYIEFQGAKKEWGDGIRGLALSAARF 216
Query: 588 SAHNLARTGEHVKNY 602
S L H KN+
Sbjct: 217 SLLRLEEGPPHTKNW 231
>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 41.5 bits (93), Expect = 0.003
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 318 GIQAGANISGDLKDPASAIPKGTLLAL 344
G+ +G N+SGDLKDP+S IP GTL AL
Sbjct: 148 GVLSGINMSGDLKDPSSNIPAGTLAAL 174
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 456 FSKPYGRHGEAYRGYXXXXXXXXXXXXIAKLNAIAPLISNFYLASYALINFCTFHAAL 513
++K G + E Y I LNA+AP+++ +L +YA I++ F A+
Sbjct: 406 YNKRRGANKEPYVASIFVAVIAMLFILIGNLNALAPIVTMPFLVTYASIDYAYFKLAM 463
>SB_16238| Best HMM Match : Nucleos_tra2_C (HMM E-Value=0.71)
Length = 304
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 610 GGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV----- 664
G R + V LG+ +T I GD+ +L K+C +A DNE R+V
Sbjct: 129 GRRVDFKGKPVRLGTHMTPTAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRQVRKKYK 187
Query: 665 RAFCSLVHGFNFEQG-ARALIQATGVG 690
RAF ++ H + G A + + GVG
Sbjct: 188 RAF-AVTHAVSVASGIAAGALSSAGVG 213
>SB_29563| Best HMM Match : IncA (HMM E-Value=0.37)
Length = 223
Score = 32.3 bits (70), Expect = 2.1
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV-----RAFCSLVHGFNFE 677
G+ +T A I GD+ +L K+C +A DNE RKV RAF + H +
Sbjct: 23 GTHMTPAAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRKVRKKYKRAF-AFTHAVSVA 80
Query: 678 QG-ARALIQATGVG 690
G A + + GVG
Sbjct: 81 SGIAAGALSSAGVG 94
>SB_5731| Best HMM Match : OAR (HMM E-Value=2.8)
Length = 194
Score = 32.3 bits (70), Expect = 2.1
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV-----RAFCSLVHGFNFE 677
G+ +T A I GD+ +L K+C +A DNE RKV RAF + H +
Sbjct: 23 GTHMTPAAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRKVRKKYKRAF-AFTHAVSVA 80
Query: 678 QG-ARALIQATGVG 690
G A + + GVG
Sbjct: 81 SGIAAGALSSAGVG 94
>SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 610 GGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVR 665
G R + V LG+ +T I GD+ +L K+C +A DNE R+VR
Sbjct: 208 GRRVDFKGKPVRLGTHMTPTAPASIGGDVQSFRLQ-KICDTQAVLDNEMTHHRQVR 262
>SB_7380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 31.9 bits (69), Expect = 2.8
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 606 LLVLGGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV- 664
LLV G PP G+ +T I GD+ +L K+C +A DNE R+V
Sbjct: 268 LLVGGAHLSVCPPK---GTHMTPTAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRQVR 323
Query: 665 ----RAFCSLVHGFNFEQG-ARALIQATGVG 690
RAF ++ H + G A + + GVG
Sbjct: 324 KKYKRAF-AVTHAVSVASGIAAGALSSAGVG 353
>SB_42509| Best HMM Match : DUF533 (HMM E-Value=0.14)
Length = 773
Score = 31.9 bits (69), Expect = 2.8
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 610 GGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV----- 664
G R + V LG+ +T I GD+ +L K+C+ +A DNE R+V
Sbjct: 522 GRRVDFKGKPVRLGTHMTPTAPASIGGDVQSFRLQ-KICNTQAVLDNEITHHRQVRKKYK 580
Query: 665 RAFCSLVHGFNFEQG-ARALIQATGVG 690
RAF ++ H + G A + + G+G
Sbjct: 581 RAF-AVTHAVSVASGIAAGALSSAGLG 606
>SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 31.5 bits (68), Expect = 3.6
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 251 IAIIVGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFV----------ENFNSDFKYSE- 299
+A+ + ++ +V + S L A FV LS FV N+++ K++
Sbjct: 128 LAVFLAVLITIIVSSGTRQASILNKAVTFVNLSVVVFVICVGFYFADTSNWSTLEKFAPY 187
Query: 300 GMEQNFFSVFAIFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSY 351
G E + + FF V G + K+P AIP +L +L+S ++Y
Sbjct: 188 GYEGVIAAAGSCFFAFV-GFDVIGTAGEETKNPKKAIPLALMLTILVSFLAY 238
>SB_17284| Best HMM Match : IncA (HMM E-Value=0.24)
Length = 416
Score = 31.1 bits (67), Expect = 4.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVR 665
G+ +T A I GD+ ++ K+C RA DNE R+VR
Sbjct: 211 GTHMTPAAPASISGDVQSFRIQ-KICDTRAVLDNEITHHRQVR 252
>SB_15314| Best HMM Match : DoxX (HMM E-Value=0.17)
Length = 262
Score = 31.1 bits (67), Expect = 4.8
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 16/222 (7%)
Query: 129 GWSLVI-IALSAVVCVITT-LSMSAICTNGEVKGGGIYYIISRSLGPEFGASVGIIFAFA 186
G+SLV + L ++ I L + + T + GG++ +S +LGP +G + I F +
Sbjct: 39 GFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFA-AISFGYL 97
Query: 187 NAVAASMNTIGFCDSMNHLLKSLDLQIIDNSYNDVRIIGAIALFVMCVICAVGMDWESKA 246
IGF + +L +L + + N+ I IA + ++ A+ + +
Sbjct: 98 QI------AIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALI--ILWALALT-QFGG 148
Query: 247 QNFLIAIIVGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFVENFNSDFKYSEGMEQNFF 306
+ I A V F G ++ + +A ++ +E + F + + +
Sbjct: 149 TKYTARI---AKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF-FPDFSKVGTL 204
Query: 307 SVFAIFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISM 348
VF F S G++A A ++ +P P LL ++ ++
Sbjct: 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAI 246
>SB_18435| Best HMM Match : Beta_elim_lyase (HMM E-Value=7.1)
Length = 275
Score = 31.1 bits (67), Expect = 4.8
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 610 GGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQE---RKVRA 666
G R + V LG+ +T I GD+ +L K+C +A DNE RK RA
Sbjct: 201 GRRVDFKGKPVRLGTHMTPTAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRLVRKKRA 259
Query: 667 FCSLVHGFNFEQGAR 681
F ++ H + G R
Sbjct: 260 F-AVTHAVSVASGIR 273
>SB_27647| Best HMM Match : IncA (HMM E-Value=0.78)
Length = 183
Score = 30.7 bits (66), Expect = 6.4
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 636 GDISKEKLSYKVCSARARADNEWLQERKV-----RAFCSLVHGFNFEQG-ARALIQATGV 689
GD+ +L K+C +A DNE R+V RAF ++ H + E G A + + GV
Sbjct: 30 GDVQSFRLQ-KICDTQAVLDNEITHHRQVRKKYKRAF-AVAHAVSLESGIAAGALSSAGV 87
Query: 690 GKL 692
G L
Sbjct: 88 GVL 90
>SB_5590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 30.3 bits (65), Expect = 8.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVR 665
G+ +T A S I GD+ +L K+C +A DNE R+VR
Sbjct: 23 GTHMTPAVSASIGGDVQSFRLQ-KICDTQAVLDNEITHHRQVR 64
>SB_4044| Best HMM Match : IncA (HMM E-Value=0.44)
Length = 222
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVR 665
G+ +T A I GD+ +L K+C +A DNE R+VR
Sbjct: 23 GTHVTPAVPASIAGDVQSFRLQ-KICDTQAVLDNEITHHRQVR 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,473,458
Number of Sequences: 59808
Number of extensions: 1065976
Number of successful extensions: 2328
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2298
Number of HSP's gapped (non-prelim): 34
length of query: 1036
length of database: 16,821,457
effective HSP length: 89
effective length of query: 947
effective length of database: 11,498,545
effective search space: 10889122115
effective search space used: 10889122115
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)
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