BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001472-TA|BGIBMGA001472-PA|IPR004842|Na-K-Cl cotransporter superfamily, IPR002443|Na-K-Cl co-transporter, IPR004841|Amino acid permease-associated region (1036 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 476 e-134 SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) 278 2e-74 SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29) 174 4e-43 SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3) 60 7e-09 SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-04 SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.003 SB_16238| Best HMM Match : Nucleos_tra2_C (HMM E-Value=0.71) 33 1.6 SB_29563| Best HMM Match : IncA (HMM E-Value=0.37) 32 2.1 SB_5731| Best HMM Match : OAR (HMM E-Value=2.8) 32 2.1 SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.8 SB_7380| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.8 SB_42509| Best HMM Match : DUF533 (HMM E-Value=0.14) 32 2.8 SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.6 SB_17284| Best HMM Match : IncA (HMM E-Value=0.24) 31 4.8 SB_15314| Best HMM Match : DoxX (HMM E-Value=0.17) 31 4.8 SB_18435| Best HMM Match : Beta_elim_lyase (HMM E-Value=7.1) 31 4.8 SB_27647| Best HMM Match : IncA (HMM E-Value=0.78) 31 6.4 SB_5590| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.4 SB_4044| Best HMM Match : IncA (HMM E-Value=0.44) 30 8.4 >SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 873 Score = 476 bits (1174), Expect = e-134 Identities = 258/620 (41%), Positives = 356/620 (57%), Gaps = 40/620 (6%) Query: 100 EGVLIPCLLNIWGVMLFLRISWVVSQAGIGWSLVIIALSAVVCVITTLSMSAICTNGEVK 159 +GV CLLNIWGVML+LR+SWVV QAGIG + VII LSAVV +TTLSMSAICTNGEVK Sbjct: 27 KGVFFGCLLNIWGVMLYLRLSWVVGQAGIGLATVIIMLSAVVTTVTTLSMSAICTNGEVK 86 Query: 160 GGGIYYIISRSLGPEFGASVGIIFAFANAVAASMNTIGFCDSMNHLLKSLDLQIIDNSYN 219 GGG YY+ISRSLGPEFG S+GIIF+ A+AVA +M +GF +++ LLK I+D N Sbjct: 87 GGGAYYLISRSLGPEFGGSIGIIFSIASAVAVAMYVVGFAETVRDLLKENGALIVDE-VN 145 Query: 220 DVRIIGAIALFVMCVICAVGMDWESKAQNFLIAIIVGAIVDFVVGAVMGPKSNLEVAEGF 279 DVRIIG I + + + VG+ W + Q L+A+++ +I+D ++G +GP++ A+GF Sbjct: 146 DVRIIGLITIVFILAVALVGLKWVVRTQVILLAVLIISILDVIIGTFIGPQNASSKAQGF 205 Query: 280 VGLSTSTFVENFNSDFKYSEGMEQNFFSVFAIFFPSVTGIQAGANISGDLKDPASAIPKG 339 +G F NF DF+ EG FFSVFAIFFP+ TGI AG NISGDLK+P +A+PKG Sbjct: 206 LGYQDGVFQTNFMPDFR-GEG----FFSVFAIFFPAATGILAGVNISGDLKNPHTAVPKG 260 Query: 340 TLLALLISMVSYAMMVLFTGAAALRDASGNITDLVISNGTVTNYSAVSQCANSTLFPCKY 399 TLLA+L+S + Y ++ GA RDA+G + + + NG+ + S V+ C + Sbjct: 261 TLLAILVSSLVYIVLAWLIGATYARDATGLVMSVAVVNGS--SQSNVTSIPTCDTMKCLF 318 Query: 400 GMHVDFEIMQLMSAWGPFIYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKP 459 G++ D + MQ S WGP + AG + P+ QA+ D+++P + +F Sbjct: 319 GLYFDNQAMQKASGWGPIVTAGIFASTLSSAIASIVGAPKTFQAVCKDKLFPKIDYFGVG 378 Query: 460 YGRHGEAYRGYXXXXXXXXXXXXIAKLNAIAPLISNFYLASYALINFCTFHAALVRPLGW 519 YG E RGY I LNAIAP+ISNF+L YALIN+ TF A+L R GW Sbjct: 379 YGPGNEPKRGYVLAFLIACAFTAIGDLNAIAPIISNFFLIVYALINYATFVASLGRSPGW 438 Query: 520 RPTFKYYNVWV-------------------SLAGFLMCVGIMLLISW-----------IM 549 RP+F++YN+WV +L ++ VG+ + + Sbjct: 439 RPSFRFYNMWVSLIGALLCVAIMFLINWWAALVTIMIVVGLYKFVDYRKPNDNEIERDSF 498 Query: 550 SLVTIAIFFTLYLIVHYRN-PDVNWGSSTQAQMYKTALSSAHNLARTGEHVKNYWPQLLV 608 + V + +FF + VNWGSS QA Y +AL L EHVKN+ PQ LV Sbjct: 499 AFVNVPVFFVKVPNIKTEPFSQVNWGSSGQANTYMSALRFTTLLDTHEEHVKNFRPQCLV 558 Query: 609 LGGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVRAFC 668 L GR RP L+ + S +TK LM+ G++ ++K K+ R D +WL+E K++AF Sbjct: 559 LSGRPAERPDLMYIASQLTKNSGLMMYGNVCRQKFD-KISDDEEREDAKWLKEHKIKAFR 617 Query: 669 SLVHGFNFEQGARALIQATG 688 + + G L G Sbjct: 618 ATTTAHSLRTGIAPLADLEG 637 Score = 125 bits (301), Expect = 2e-28 Identities = 74/188 (39%), Positives = 99/188 (52%), Gaps = 13/188 (6%) Query: 850 FKRKQESGTVDVWWLYDDVGLTILLPYIISQRSAWGNCKLRIFXXXXXXXXXXXXXXXXX 909 F+ KQ GT+DVWWLYDD GLTILLPY+++ W +C LR+F Sbjct: 698 FEGKQR-GTIDVWWLYDDGGLTILLPYLLTLHRLWRSCDLRLFYLDIRSKHAIKADQLKM 756 Query: 910 XXX-SKFRIDYSSLTMVQDITEPPQAETKALFDETIKKFTSDSAAPECRISETELTTLSG 968 KFRI SS+ V P E+ F A P R + Sbjct: 757 ANLMKKFRIQVSSVVQVPGANTAPSGESLDAF----------RALPVGRELDDGPID-DK 805 Query: 969 KTNRQLRLRELLLANSRDSRLIVMSLPMPRKGSVSAPLYMAWLEMMSRDLPPMLFVRGNH 1028 K R +R+ EL+ S +++L+V+SLP+P + +YM+WLEM+S+DLPP+L VRGN Sbjct: 806 KVLRTIRIGELVRKRSNNAKLVVISLPVPVAEMTTPLMYMSWLEMLSKDLPPVLLVRGNQ 865 Query: 1029 TSVLTFYS 1036 SVLTFYS Sbjct: 866 RSVLTFYS 873 >SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 766 Score = 278 bits (681), Expect = 2e-74 Identities = 140/333 (42%), Positives = 194/333 (58%), Gaps = 6/333 (1%) Query: 408 MQLMSAWGPFIYAGCWXXXXXXXXXXXXXVPRLIQALGVDRIYPGLIFFSKPYGRHGEAY 467 M+ MSAWGP + G + P+ QAL D I+P + +F G E Sbjct: 1 MEKMSAWGPLVTCGIFAATLSSALASLVGAPKTFQALCKDNIFPYIGYFGIGVGPGEEPR 60 Query: 468 RGYXXXXXXXXXXXXIAKLNAIAPLISNFYLASYALINFCTFHAALVRPLGWRPTFKYYN 527 RGY + LN IAP+ISNF+L SYALIN+ F A+L R GWRP+F+YYN Sbjct: 61 RGYILTFIIAVGFVAVGNLNVIAPVISNFFLMSYALINYAVFAASLGRSPGWRPSFRYYN 120 Query: 528 VWVSLAGFLMCVGIMLLISWIMSLVTIAIFFTLYLIVHYRNPDVNWGSSTQAQMYKTALS 587 +WVSL G L+CV IM LI+W +LVTIAI +L+ V + P+VNWGSS QA Y AL Sbjct: 121 MWVSLVGALLCVAIMFLINWWAALVTIAIIASLHKYVDIKKPEVNWGSSAQAFTYIQALR 180 Query: 588 SAHNLARTGEHVKNYWPQLLVLGGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKV 647 A+ L T +HVKN+ PQ LVL G +RP L + S ITK LM+ G ++ L Sbjct: 181 FAYRLNNTEDHVKNFRPQCLVLTGAPSSRPNLTYIVSQITKNVGLMVCGQVNVGSL---- 236 Query: 648 CSARARADNEWLQERKVRAFCSLVHGFNFEQGARALIQATGVGKLAPNVLLMGYKSDWTT 707 + +++ +WL+ERK+RAF ++ + G ++L+Q G+GKL PN L++G+K +W Sbjct: 237 --CQVKSEKDWLRERKIRAFHTVCSAASLRDGVQSLLQTAGLGKLKPNTLVIGFKRNWMR 294 Query: 708 ASAEDLVAYFNVLHTAFENRLAVAIVRVRGGLD 740 A ++ Y N+++ AFE VAI+RVR D Sbjct: 295 APHSEVEEYVNIINDAFELNYGVAILRVREEFD 327 Score = 143 bits (347), Expect = 6e-34 Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 14/186 (7%) Query: 850 FKRKQESGTVDVWWLYDDVGLTILLPYIISQRSAWGNCKLRIFXXXXXXXXXXXXXXXXX 909 FK KQ+ GTVDVWWL+DD GLTIL+PY+++ S W C+LRIF Sbjct: 594 FKGKQK-GTVDVWWLFDDGGLTILIPYLLTLHSLWKGCRLRIF--TPGSSNIKNNEIRMA 650 Query: 910 XXXSKFRIDYSSLTMVQDITEPPQAETKALFDETIKKFTSDSAAPECRISETELTTLSGK 969 KFRID+SS+ +V I + P +++++ F E E L + Sbjct: 651 NLLKKFRIDFSSIEVVHGIDKAPS-------NKSVQDFRRLPIKEEL----DEGVQLDKR 699 Query: 970 TNRQLRLRELLLANSRDSRLIVMSLPMPRKGSVSAPLYMAWLEMMSRDLPPMLFVRGNHT 1029 RQ+R+ ELL +S+D+RLIVM+LP+P+ +S +YM+WLE++S DLPP+ +RGN T Sbjct: 700 ILRQIRIGELLRQHSKDARLIVMTLPVPKPTLMSPLMYMSWLEVLSADLPPVFLIRGNQT 759 Query: 1030 SVLTFY 1035 SVLTFY Sbjct: 760 SVLTFY 765 >SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29) Length = 420 Score = 174 bits (423), Expect = 4e-43 Identities = 94/219 (42%), Positives = 134/219 (61%), Gaps = 30/219 (13%) Query: 158 VKGGGIYYIISRSLGPEFGASVGIIFAFANAVAASMNTIGFCDSMNHLLKSLDLQIIDNS 217 V GG YY+ISRSLGPEFG S+G+IF+ ANAVA ++ +GF +++ +L+ IID Sbjct: 202 VPTGGAYYLISRSLGPEFGGSIGLIFSLANAVAVALYVVGFAETVRDILRENGSLIIDE- 260 Query: 218 YNDVRIIGAIALFVMCVICAVGMDWES-------------------------KAQNFLIA 252 ND+R+IG I++ + + +G++W S + Q L+ Sbjct: 261 VNDIRVIGVISVLALLAVTLIGLEWVSSRIRTLNRRSRLFKLHYINLNRRDVRTQMVLLG 320 Query: 253 IIVGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFVENFNSDFKYSEGMEQNFFSVFAIF 312 I++ +IVD +VG+ +GP+ L VA+G VGL+ TF N D++ E +FFSVFA+F Sbjct: 321 ILLISIVDAIVGSFIGPQDKLSVAQGIVGLNAKTFTTNLLPDYRPGE----HFFSVFAVF 376 Query: 313 FPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSY 351 FP+ TGI AG NISGDLKD AIPKGTL A+L+S + Y Sbjct: 377 FPAATGILAGVNISGDLKDAQKAIPKGTLWAILLSTLVY 415 >SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3) Length = 266 Score = 60.5 bits (140), Expect = 7e-09 Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 30/159 (18%) Query: 165 YIISRSLGPEFGASVGIIFAFANAVAASMNTIGFCDS-MNHLLKSLDLQIIDNSYND--V 221 Y+ISR+LGPEFG ++GIIF FAN A+++ +GF ++ +N+ L I++ + Sbjct: 43 YMISRTLGPEFGGAIGIIFFFANVFASALYVLGFVEALLNNFGPRGSLAHIESFHQGYWY 102 Query: 222 RIIGAIALFVMCV-ICAVGMDWESKAQNFLIAIIVGAIVDFVVGAVMGPKSNLEVAEGFV 280 + + A+ ++C+ +C +G +K +F+I + AVM Sbjct: 103 QFLYGSAILMLCLAVCMIGAGMFAKT-SFVIFL-----------AVM------------- 137 Query: 281 GLSTSTFVENFNSDFKYSEGMEQNFFSVFAIFFPSVTGI 319 +S S + F D+ E EQ + VFAI F VTGI Sbjct: 138 -VSVSAALPKFTKDYTKDEHSEQTWLQVFAILFNGVTGI 175 >SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 919 Score = 45.6 bits (103), Expect = 2e-04 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 10/72 (13%) Query: 634 IIGDISKEKLSYKVCSARARADNEWLQERKVRAFCSLVHGFNFEQGARALIQATGVGKLA 693 ++ DI+ K + KVC ++E KV+ F +V N +QG LIQ +G+G L Sbjct: 513 LVTDITSAKENLKVC----------MKEEKVKGFMKIVTSENVKQGISFLIQGSGLGGLD 562 Query: 694 PNVLLMGYKSDW 705 PN +L+ + +W Sbjct: 563 PNTVLLAFPENW 574 Score = 40.3 bits (90), Expect = 0.008 Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 528 VWVSLAGFLMCVGIMLLISWIMSLVTIAIFFTLYLIVHYRNPDVNWGSSTQAQMYKTALS 587 ++ S G +C+ +M + SW +LV + I +Y + ++ WG + A Sbjct: 157 MFTSFLGVCLCLALMFISSWYYALVAMIIAAAVYKYIEFQGAKKEWGDGIRGLALSAARF 216 Query: 588 SAHNLARTGEHVKNY 602 S L H KN+ Sbjct: 217 SLLRLEEGPPHTKNW 231 >SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 684 Score = 41.5 bits (93), Expect = 0.003 Identities = 18/27 (66%), Positives = 22/27 (81%) Query: 318 GIQAGANISGDLKDPASAIPKGTLLAL 344 G+ +G N+SGDLKDP+S IP GTL AL Sbjct: 148 GVLSGINMSGDLKDPSSNIPAGTLAAL 174 Score = 31.9 bits (69), Expect = 2.8 Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 456 FSKPYGRHGEAYRGYXXXXXXXXXXXXIAKLNAIAPLISNFYLASYALINFCTFHAAL 513 ++K G + E Y I LNA+AP+++ +L +YA I++ F A+ Sbjct: 406 YNKRRGANKEPYVASIFVAVIAMLFILIGNLNALAPIVTMPFLVTYASIDYAYFKLAM 463 >SB_16238| Best HMM Match : Nucleos_tra2_C (HMM E-Value=0.71) Length = 304 Score = 32.7 bits (71), Expect = 1.6 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 610 GGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV----- 664 G R + V LG+ +T I GD+ +L K+C +A DNE R+V Sbjct: 129 GRRVDFKGKPVRLGTHMTPTAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRQVRKKYK 187 Query: 665 RAFCSLVHGFNFEQG-ARALIQATGVG 690 RAF ++ H + G A + + GVG Sbjct: 188 RAF-AVTHAVSVASGIAAGALSSAGVG 213 >SB_29563| Best HMM Match : IncA (HMM E-Value=0.37) Length = 223 Score = 32.3 bits (70), Expect = 2.1 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV-----RAFCSLVHGFNFE 677 G+ +T A I GD+ +L K+C +A DNE RKV RAF + H + Sbjct: 23 GTHMTPAAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRKVRKKYKRAF-AFTHAVSVA 80 Query: 678 QG-ARALIQATGVG 690 G A + + GVG Sbjct: 81 SGIAAGALSSAGVG 94 >SB_5731| Best HMM Match : OAR (HMM E-Value=2.8) Length = 194 Score = 32.3 bits (70), Expect = 2.1 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV-----RAFCSLVHGFNFE 677 G+ +T A I GD+ +L K+C +A DNE RKV RAF + H + Sbjct: 23 GTHMTPAAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRKVRKKYKRAF-AFTHAVSVA 80 Query: 678 QG-ARALIQATGVG 690 G A + + GVG Sbjct: 81 SGIAAGALSSAGVG 94 >SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 464 Score = 31.9 bits (69), Expect = 2.8 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 610 GGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVR 665 G R + V LG+ +T I GD+ +L K+C +A DNE R+VR Sbjct: 208 GRRVDFKGKPVRLGTHMTPTAPASIGGDVQSFRLQ-KICDTQAVLDNEMTHHRQVR 262 >SB_7380| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 408 Score = 31.9 bits (69), Expect = 2.8 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 11/91 (12%) Query: 606 LLVLGGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV- 664 LLV G PP G+ +T I GD+ +L K+C +A DNE R+V Sbjct: 268 LLVGGAHLSVCPPK---GTHMTPTAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRQVR 323 Query: 665 ----RAFCSLVHGFNFEQG-ARALIQATGVG 690 RAF ++ H + G A + + GVG Sbjct: 324 KKYKRAF-AVTHAVSVASGIAAGALSSAGVG 353 >SB_42509| Best HMM Match : DUF533 (HMM E-Value=0.14) Length = 773 Score = 31.9 bits (69), Expect = 2.8 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%) Query: 610 GGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKV----- 664 G R + V LG+ +T I GD+ +L K+C+ +A DNE R+V Sbjct: 522 GRRVDFKGKPVRLGTHMTPTAPASIGGDVQSFRLQ-KICNTQAVLDNEITHHRQVRKKYK 580 Query: 665 RAFCSLVHGFNFEQG-ARALIQATGVG 690 RAF ++ H + G A + + G+G Sbjct: 581 RAF-AVTHAVSVASGIAAGALSSAGLG 606 >SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 572 Score = 31.5 bits (68), Expect = 3.6 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%) Query: 251 IAIIVGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFV----------ENFNSDFKYSE- 299 +A+ + ++ +V + S L A FV LS FV N+++ K++ Sbjct: 128 LAVFLAVLITIIVSSGTRQASILNKAVTFVNLSVVVFVICVGFYFADTSNWSTLEKFAPY 187 Query: 300 GMEQNFFSVFAIFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSY 351 G E + + FF V G + K+P AIP +L +L+S ++Y Sbjct: 188 GYEGVIAAAGSCFFAFV-GFDVIGTAGEETKNPKKAIPLALMLTILVSFLAY 238 >SB_17284| Best HMM Match : IncA (HMM E-Value=0.24) Length = 416 Score = 31.1 bits (67), Expect = 4.8 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVR 665 G+ +T A I GD+ ++ K+C RA DNE R+VR Sbjct: 211 GTHMTPAAPASISGDVQSFRIQ-KICDTRAVLDNEITHHRQVR 252 >SB_15314| Best HMM Match : DoxX (HMM E-Value=0.17) Length = 262 Score = 31.1 bits (67), Expect = 4.8 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 16/222 (7%) Query: 129 GWSLVI-IALSAVVCVITT-LSMSAICTNGEVKGGGIYYIISRSLGPEFGASVGIIFAFA 186 G+SLV + L ++ I L + + T + GG++ +S +LGP +G + I F + Sbjct: 39 GFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFA-AISFGYL 97 Query: 187 NAVAASMNTIGFCDSMNHLLKSLDLQIIDNSYNDVRIIGAIALFVMCVICAVGMDWESKA 246 IGF + +L +L + + N+ I IA + ++ A+ + + Sbjct: 98 QI------AIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALI--ILWALALT-QFGG 148 Query: 247 QNFLIAIIVGAIVDFVVGAVMGPKSNLEVAEGFVGLSTSTFVENFNSDFKYSEGMEQNFF 306 + I A V F G ++ + +A ++ +E + F + + + Sbjct: 149 TKYTARI---AKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF-FPDFSKVGTL 204 Query: 307 SVFAIFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISM 348 VF F S G++A A ++ +P P LL ++ ++ Sbjct: 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAI 246 >SB_18435| Best HMM Match : Beta_elim_lyase (HMM E-Value=7.1) Length = 275 Score = 31.1 bits (67), Expect = 4.8 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Query: 610 GGRAHARPPLVDLGSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQE---RKVRA 666 G R + V LG+ +T I GD+ +L K+C +A DNE RK RA Sbjct: 201 GRRVDFKGKPVRLGTHMTPTAPASIGGDVQSFRLQ-KICDTQAVLDNEITHHRLVRKKRA 259 Query: 667 FCSLVHGFNFEQGAR 681 F ++ H + G R Sbjct: 260 F-AVTHAVSVASGIR 273 >SB_27647| Best HMM Match : IncA (HMM E-Value=0.78) Length = 183 Score = 30.7 bits (66), Expect = 6.4 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%) Query: 636 GDISKEKLSYKVCSARARADNEWLQERKV-----RAFCSLVHGFNFEQG-ARALIQATGV 689 GD+ +L K+C +A DNE R+V RAF ++ H + E G A + + GV Sbjct: 30 GDVQSFRLQ-KICDTQAVLDNEITHHRQVRKKYKRAF-AVAHAVSLESGIAAGALSSAGV 87 Query: 690 GKL 692 G L Sbjct: 88 GVL 90 >SB_5590| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 227 Score = 30.3 bits (65), Expect = 8.4 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVR 665 G+ +T A S I GD+ +L K+C +A DNE R+VR Sbjct: 23 GTHMTPAVSASIGGDVQSFRLQ-KICDTQAVLDNEITHHRQVR 64 >SB_4044| Best HMM Match : IncA (HMM E-Value=0.44) Length = 222 Score = 30.3 bits (65), Expect = 8.4 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 623 GSLITKAGSLMIIGDISKEKLSYKVCSARARADNEWLQERKVR 665 G+ +T A I GD+ +L K+C +A DNE R+VR Sbjct: 23 GTHVTPAVPASIAGDVQSFRLQ-KICDTQAVLDNEITHHRQVR 64 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.323 0.136 0.410 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 29,473,458 Number of Sequences: 59808 Number of extensions: 1065976 Number of successful extensions: 2328 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 2298 Number of HSP's gapped (non-prelim): 34 length of query: 1036 length of database: 16,821,457 effective HSP length: 89 effective length of query: 947 effective length of database: 11,498,545 effective search space: 10889122115 effective search space used: 10889122115 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (22.0 bits) S2: 65 (30.3 bits)
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