Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001471-TA|BGIBMGA001471-PA|IPR005713|Ribosomal protein
S15, eukaryotic and archaeal form, IPR002222|Ribosomal protein S19/S15
         (147 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             244   2e-65
SB_25881| Best HMM Match : SNARE (HMM E-Value=9.8)                     29   2.1  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)                   27   8.3  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  244 bits (597), Expect = 2e-65
 Identities = 112/143 (78%), Positives = 126/143 (88%)

Query: 5   DETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRR 64
           D  +K+KR FRKFTYRGVDLDQLLD+ +EQLMEL+          GLKRKP+AL+K+LR+
Sbjct: 7   DAQIKRKRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRK 66

Query: 65  AKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVT 124
           AKKEA P EKPE+VKTHLRNMIIVPEM+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+T
Sbjct: 67  AKKEAAPMEKPEVVKTHLRNMIIVPEMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSIT 126

Query: 125 YKPVKHGRPGIGATHSSRFIPLK 147
           YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 127 YKPVKHGRPGIGATHSSRFIPLK 149


>SB_25881| Best HMM Match : SNARE (HMM E-Value=9.8)
          Length = 251

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 52  KRKPMALVKKLRRAK-KEAPPNEKPEIVKTHLRN 84
           +RK   ++ K+RR K +EA PN K +  KT+ +N
Sbjct: 95  RRKSQYILPKIRRLKYEEASPNLKKQCTKTNNKN 128


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 108  EIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIP 145
            ++KP++  +  G ++V Y P K GR  I   +  R +P
Sbjct: 1714 DLKPDVKDNGDGTYTVAYVPDKPGRYNIDVKYGDRRVP 1751


>SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)
          Length = 323

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 122 SVTYKPVKHGRPGIGATHS 140
           S+ Y+   H  PGI ATHS
Sbjct: 80  SLPYRSATHSSPGISATHS 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,659,678
Number of Sequences: 59808
Number of extensions: 167872
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 28
length of query: 147
length of database: 16,821,457
effective HSP length: 76
effective length of query: 71
effective length of database: 12,276,049
effective search space: 871599479
effective search space used: 871599479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)