Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001471-TA|BGIBMGA001471-PA|IPR005713|Ribosomal protein
S15, eukaryotic and archaeal form, IPR002222|Ribosomal protein S19/S15
         (147 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB...   266   1e-71
AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p pro...   264   3e-71
AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA...   264   3e-71
AY058318-1|AAL13547.1|  872|Drosophila melanogaster GH08353p pro...    31   0.83 
AE014296-3271|AAF49077.2|  872|Drosophila melanogaster CG14183-P...    31   0.83 
X55542-1|CAA39148.1|  530|Drosophila melanogaster cyclin B protein.    27   7.8  
M33192-1|AAA28436.1|  530|Drosophila melanogaster protein ( D.me...    27   7.8  
AY102682-1|AAM27511.1|  530|Drosophila melanogaster LD23613p pro...    27   7.8  
AJ006773-3|CAA07240.1|  500|Drosophila melanogaster cyclin B, ty...    27   7.8  
AJ006773-2|CAA07239.1|  524|Drosophila melanogaster cyclin B, ty...    27   7.8  
AJ006773-1|CAA07238.1|  530|Drosophila melanogaster cyclin B, ty...    27   7.8  
AE013599-3472|AAM71124.1|  500|Drosophila melanogaster CG3510-PC...    27   7.8  
AE013599-3471|AAG22197.1|  524|Drosophila melanogaster CG3510-PB...    27   7.8  
AE013599-3470|AAM71123.1|  530|Drosophila melanogaster CG3510-PD...    27   7.8  
AE013599-3469|AAF46904.1|  530|Drosophila melanogaster CG3510-PA...    27   7.8  

>AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB,
           isoform B protein.
          Length = 147

 Score =  266 bits (651), Expect = 1e-71
 Identities = 121/147 (82%), Positives = 131/147 (89%)

Query: 1   MAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVK 60
           M +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+K
Sbjct: 1   MQQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIK 60

Query: 61  KLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGE 120
           KLR+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGE
Sbjct: 61  KLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGE 120

Query: 121 FSVTYKPVKHGRPGIGATHSSRFIPLK 147
           F++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 FALTYKPVKHGRPGIGATHSSRFIPLK 147


>AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p
           protein.
          Length = 148

 Score =  264 bits (647), Expect = 3e-71
 Identities = 120/145 (82%), Positives = 130/145 (89%)

Query: 3   EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 62
           +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKL
Sbjct: 4   QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63

Query: 63  RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 122
           R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64  RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123

Query: 123 VTYKPVKHGRPGIGATHSSRFIPLK 147
           +TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 LTYKPVKHGRPGIGATHSSRFIPLK 148


>AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA,
           isoform A protein.
          Length = 148

 Score =  264 bits (647), Expect = 3e-71
 Identities = 120/145 (82%), Positives = 130/145 (89%)

Query: 3   EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 62
           +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKL
Sbjct: 4   QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63

Query: 63  RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 122
           R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64  RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123

Query: 123 VTYKPVKHGRPGIGATHSSRFIPLK 147
           +TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 LTYKPVKHGRPGIGATHSSRFIPLK 148


>AY058318-1|AAL13547.1|  872|Drosophila melanogaster GH08353p
           protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 58  LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 100
           L+KK  R KK  PP EK    K +    ++  E+V  +  IY+
Sbjct: 20  LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62


>AE014296-3271|AAF49077.2|  872|Drosophila melanogaster CG14183-PA
           protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 58  LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 100
           L+KK  R KK  PP EK    K +    ++  E+V  +  IY+
Sbjct: 20  LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62


>X55542-1|CAA39148.1|  530|Drosophila melanogaster cyclin B protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 174 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 213


>M33192-1|AAA28436.1|  530|Drosophila melanogaster protein (
           D.melanogaster cyclinB mRNA, complete cds. ).
          Length = 530

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 174 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 213


>AY102682-1|AAM27511.1|  530|Drosophila melanogaster LD23613p
           protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 174 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 213


>AJ006773-3|CAA07240.1|  500|Drosophila melanogaster cyclin B, type
           III protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 144 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 183


>AJ006773-2|CAA07239.1|  524|Drosophila melanogaster cyclin B, type
           II protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 168 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 207


>AJ006773-1|CAA07238.1|  530|Drosophila melanogaster cyclin B, type
           I protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 174 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 213


>AE013599-3472|AAM71124.1|  500|Drosophila melanogaster CG3510-PC,
           isoform C protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 144 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 183


>AE013599-3471|AAG22197.1|  524|Drosophila melanogaster CG3510-PB,
           isoform B protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 168 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 207


>AE013599-3470|AAM71123.1|  530|Drosophila melanogaster CG3510-PD,
           isoform D protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 174 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 213


>AE013599-3469|AAF46904.1|  530|Drosophila melanogaster CG3510-PA,
           isoform A protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 50  GLKRKPMALVKKLRRAKKEAPPNEKPEI-VKTHLRNMIIV 88
           G++R+P+A+ +K    KKE P  +K  + VK     M ++
Sbjct: 174 GIRREPVAVSRKEAETKKELPETKKDSLEVKKDATRMPLI 213


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,989,990
Number of Sequences: 52641
Number of extensions: 267676
Number of successful extensions: 671
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 15
length of query: 147
length of database: 24,830,863
effective HSP length: 78
effective length of query: 69
effective length of database: 20,724,865
effective search space: 1430015685
effective search space used: 1430015685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)