GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001471-TA|BGIBMGA001471-PA|IPR005713|Ribosomal protein
S15, eukaryotic and archaeal form, IPR002222|Ribosomal protein S19/S15
         (147 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   215   3e-57
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   214   5e-57
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    52   4e-08
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   0.67 
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    27   1.5  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   2.7  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   3.6  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   4.7  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   6.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   6.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    24   8.2  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    24   8.2  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  215 bits (524), Expect = 3e-57
 Identities = 99/140 (70%), Positives = 112/140 (80%)

Query: 8   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 67
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 68  EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 127
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 75  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 134

Query: 128 VKHGRPGIGATHSSRFIPLK 147
            KHGRPGIGATHSSRFIPLK
Sbjct: 135 TKHGRPGIGATHSSRFIPLK 154


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  214 bits (522), Expect = 5e-57
 Identities = 99/140 (70%), Positives = 112/140 (80%)

Query: 8   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 67
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 68  EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 127
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 74  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 133

Query: 128 VKHGRPGIGATHSSRFIPLK 147
            KHGRPGIGATHSSRFIPLK
Sbjct: 134 TKHGRPGIGATHSSRFIPLK 153


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 52.0 bits (119), Expect = 4e-08
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 78  VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 126
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 67  KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 100
           K A P++KP +  THL +++I    VG  +  ++
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 73  EKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKP 111
           EK E+  +H  N+ +V + V   + +  GK F Q +IKP
Sbjct: 120 EKCELRDSH--NLFLVDDRVLKYIPLLMGKVFEQKKIKP 156


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 90  EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 139
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 100 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 128
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 6   ETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELM 39
           E L  K   R+    G     LL+MPN +L+EL+
Sbjct: 591 ELLYPKVFVREEKLSGKITGMLLEMPNSELLELL 624


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 51 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 82
          L R+P  + +K R   KEA PN    I++  L
Sbjct: 10 LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 65  AKKEAPPNEKPEIVKTHLRNMIIV----PEMVGSIVGIYNGKTFNQVEIKPEMIG 115
           A  E  P+  P+++ + L +  +     P + GS+  +Y    FN V++  +  G
Sbjct: 192 AASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASG 246


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 18  TYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLR--RAKKEAPPNEKP 75
           T+  +    +L + N++ M+L H          +++ P A +++L   R K+EA      
Sbjct: 906 TWSAISSIHVLTITNDRDMDLEHSLKVLLDNVTVEKSPFAQLEELEVVRKKREAEIEASS 965

Query: 76  EIVK 79
           + VK
Sbjct: 966 KTVK 969


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 56  MALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIK----P 111
           M L +K  R K+E    E     + HL N+ +V + +  + G+ + K  N+  I     P
Sbjct: 81  MDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLAYVNGL-SPKVANEENINVLKGP 139

Query: 112 EMIGHY 117
           E  G Y
Sbjct: 140 EYFGQY 145


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,753
Number of Sequences: 5004
Number of extensions: 24231
Number of successful extensions: 61
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 12
length of query: 147
length of database: 2,362,478
effective HSP length: 67
effective length of query: 80
effective length of database: 2,027,210
effective search space: 162176800
effective search space used: 162176800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)