GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001471-TA|BGIBMGA001471-PA|IPR005713|Ribosomal protein
S15, eukaryotic and archaeal form, IPR002222|Ribosomal protein S19/S15
         (147 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   208   1e-54
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   193   6e-50
05_02_0018 + 5626122-5626200,5626683-5626709,5626972-5627042,562...    27   8.1  
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141...    27   8.1  
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565...    27   8.1  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  208 bits (509), Expect = 1e-54
 Identities = 105/159 (66%), Positives = 118/159 (74%), Gaps = 21/159 (13%)

Query: 10  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA---- 65
           KKR FRK++YRGVDLD LLDM  + L++L           GLKRKPMAL+KKLR+A    
Sbjct: 252 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNF 311

Query: 66  -----------------KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVE 108
                            KK+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVE
Sbjct: 312 EGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVE 371

Query: 109 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 147
           IKPEMIGHYL EFS++YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 372 IKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 410


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  193 bits (470), Expect = 6e-50
 Identities = 88/121 (72%), Positives = 101/121 (83%)

Query: 10  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 69
           KKR FRK++YRGVDLD LLDM  + L++L           GLKRKPMAL+KKLR+AKK+A
Sbjct: 124 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 183

Query: 70  PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 129
           P  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 184 PAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 243

Query: 130 H 130
           H
Sbjct: 244 H 244


>05_02_0018 +
           5626122-5626200,5626683-5626709,5626972-5627042,
           5627123-5627248,5627726-5627755
          Length = 110

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 117 YLGEFSVTYKPVKHGRPGIGATHSS 141
           Y G+ S+T +P  H R G GA+H +
Sbjct: 44  YRGQQSLTRQPCSHVRSGGGASHDA 68


>02_04_0435 +
           22912993-22913456,22913847-22914012,22914096-22914146,
           22914353-22914578,22915275-22915963,22916055-22916408
          Length = 649

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 54  KPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 99
           K  A V KL +   EA PN++P++  T  R +I  P  +  I+G Y
Sbjct: 263 KYSAAVTKLIKDMLEASPNDRPDV--TQARALIDWP-FISMILGAY 305


>01_05_0251 +
           19952882-19955459,19956209-19956245,19956370-19956586,
           19957063-19957221,19957397-19957516,19957609-19957719
          Length = 1073

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/58 (20%), Positives = 30/58 (51%)

Query: 68  EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTY 125
           E   + + EI+   L+ ++++P    S+  I++   + + +++  M   YL +  VT+
Sbjct: 800 ETKLHNRHEIISKLLKLVLVLPVATASVERIFSAMNYVKNKLRNRMGDQYLNDCLVTF 857


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,987,162
Number of Sequences: 37544
Number of extensions: 145257
Number of successful extensions: 273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 6
length of query: 147
length of database: 14,793,348
effective HSP length: 76
effective length of query: 71
effective length of database: 11,940,004
effective search space: 847740284
effective search space used: 847740284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)