BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001471-TA|BGIBMGA001471-PA|IPR005713|Ribosomal protein S15, eukaryotic and archaeal form, IPR002222|Ribosomal protein S19/S15 (147 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81077-5|CAB03065.1| 151|Caenorhabditis elegans Hypothetical pr... 206 4e-54 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 7.2 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 7.2 AL021493-7|CAA16394.2| 781|Caenorhabditis elegans Hypothetical ... 27 7.2 >Z81077-5|CAB03065.1| 151|Caenorhabditis elegans Hypothetical protein F36A2.6 protein. Length = 151 Score = 206 bits (504), Expect = 4e-54 Identities = 97/140 (69%), Positives = 112/140 (80%) Query: 8 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 67 LKKKR FRKF YRGVDLDQLLDM EQ +L+ GLKRK +AL+ K+++AKK Sbjct: 12 LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71 Query: 68 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 127 A EKP VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKP Sbjct: 72 AAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKP 131 Query: 128 VKHGRPGIGATHSSRFIPLK 147 VKHGRPGIGATHSSRFIPLK Sbjct: 132 VKHGRPGIGATHSSRFIPLK 151 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 26.6 bits (56), Expect = 7.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 66 KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 99 K+ P +E EIV + +I+ E+ G VG+Y Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 26.6 bits (56), Expect = 7.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 66 KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 99 K+ P +E EIV + +I+ E+ G VG+Y Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522 >AL021493-7|CAA16394.2| 781|Caenorhabditis elegans Hypothetical protein Y51A2B.6 protein. Length = 781 Score = 26.6 bits (56), Expect = 7.2 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Query: 53 RKPMALVKKLRRAKKEAPPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTF 104 +K + +++K+R K++ N + P +V L+N+ V E+ + N KTF Sbjct: 560 QKVIQVIQKMRNLDKDSVQNIQGIPSVVSEFLKNLAKVREISDKMKENSNNKTF 613 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.320 0.139 0.400 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,503,616 Number of Sequences: 27539 Number of extensions: 132990 Number of successful extensions: 314 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 311 Number of HSP's gapped (non-prelim): 4 length of query: 147 length of database: 12,573,161 effective HSP length: 75 effective length of query: 72 effective length of database: 10,507,736 effective search space: 756556992 effective search space used: 756556992 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 55 (26.2 bits)
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