GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001471-TA|BGIBMGA001471-PA|IPR005713|Ribosomal protein
S15, eukaryotic and archaeal form, IPR002222|Ribosomal protein S19/S15
         (147 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   206   4e-54
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   7.2  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   7.2  
AL021493-7|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    27   7.2  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  206 bits (504), Expect = 4e-54
 Identities = 97/140 (69%), Positives = 112/140 (80%)

Query: 8   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 67
           LKKKR FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71

Query: 68  EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 127
            A   EKP  VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKP
Sbjct: 72  AAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKP 131

Query: 128 VKHGRPGIGATHSSRFIPLK 147
           VKHGRPGIGATHSSRFIPLK
Sbjct: 132 VKHGRPGIGATHSSRFIPLK 151


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 66    KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 99
             K+  P +E  EIV     + +I+ E+ G  VG+Y
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 66    KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 99
             K+  P +E  EIV     + +I+ E+ G  VG+Y
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522


>AL021493-7|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 53  RKPMALVKKLRRAKKEAPPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTF 104
           +K + +++K+R   K++  N +  P +V   L+N+  V E+   +    N KTF
Sbjct: 560 QKVIQVIQKMRNLDKDSVQNIQGIPSVVSEFLKNLAKVREISDKMKENSNNKTF 613


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,503,616
Number of Sequences: 27539
Number of extensions: 132990
Number of successful extensions: 314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 4
length of query: 147
length of database: 12,573,161
effective HSP length: 75
effective length of query: 72
effective length of database: 10,507,736
effective search space: 756556992
effective search space used: 756556992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)