GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001471-TA|BGIBMGA001471-PA|IPR005713|Ribosomal protein
S15, eukaryotic and archaeal form, IPR002222|Ribosomal protein S19/S15
         (147 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 85  MIIVPEMVGSIVGIYNGKTFNQVE 108
           M+  PE  G++V IYN   F+ VE
Sbjct: 311 MVDNPESTGNLVYIYN-NPFSDVE 333


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 61  KLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFN 105
           ++ R ++ +P  +  ++ + HL+   IV     ++ G+   +TFN
Sbjct: 223 EITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFN 267


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,547
Number of Sequences: 429
Number of extensions: 1377
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 147
length of database: 140,377
effective HSP length: 52
effective length of query: 95
effective length of database: 118,069
effective search space: 11216555
effective search space used: 11216555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)