GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001471-TA|BGIBMGA001471-PA|IPR005713|Ribosomal protein
S15, eukaryotic and archaeal form, IPR002222|Ribosomal protein S19/S15
         (147 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   223   4e-59
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   223   5e-59
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   223   5e-59
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   217   2e-57
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           215   8e-57
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative          165   8e-42
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    67   5e-12
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    47   4e-06
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   1.7  
At3g09270.1 68416.m01101 glutathione S-transferase, putative sim...    27   5.1  
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    27   6.8  
At1g66980.1 68414.m07616 protein kinase family protein / glycero...    27   6.8  
At2g17580.1 68415.m02034 polynucleotide adenylyltransferase fami...    26   9.0  

>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  223 bits (545), Expect = 4e-59
 Identities = 98/140 (70%), Positives = 118/140 (84%)

Query: 8   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 67
           L KKR F+KF+++GVDLD LLDMP + L+EL           GL RKPMAL+KKLR+AK 
Sbjct: 13  LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 68  EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 127
           +AP  EKPE+V+THLRNM+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKP
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKP 132

Query: 128 VKHGRPGIGATHSSRFIPLK 147
           V+HG+PG GATHSSRFIPLK
Sbjct: 133 VRHGKPGHGATHSSRFIPLK 152


>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  223 bits (544), Expect = 5e-59
 Identities = 100/138 (72%), Positives = 116/138 (84%)

Query: 10  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 69
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 70  PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 129
           P  EKPE V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 75  PAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 134

Query: 130 HGRPGIGATHSSRFIPLK 147
           HGRPG+GATHSSRFIPLK
Sbjct: 135 HGRPGVGATHSSRFIPLK 152


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  223 bits (544), Expect = 5e-59
 Identities = 100/138 (72%), Positives = 116/138 (84%)

Query: 10  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 69
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 70  PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 129
           P  EKPE V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 75  PQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 134

Query: 130 HGRPGIGATHSSRFIPLK 147
           HGRPG+GATHSSRFIPLK
Sbjct: 135 HGRPGVGATHSSRFIPLK 152


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  217 bits (530), Expect = 2e-57
 Identities = 98/138 (71%), Positives = 115/138 (83%)

Query: 10  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 69
           KKR F+KF++RGVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 70  PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 129
           P  EKP  V+THLRNMIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 73  PAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 132

Query: 130 HGRPGIGATHSSRFIPLK 147
           HGRPG+GAT+SSRFIPLK
Sbjct: 133 HGRPGVGATNSSRFIPLK 150


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  215 bits (526), Expect = 8e-57
 Identities = 99/138 (71%), Positives = 114/138 (82%)

Query: 10  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 69
           KKR F+KF++RGVDLD LLDM  E L++            GL RKPMAL+KKLR+AK EA
Sbjct: 12  KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query: 70  PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 129
           P  EKP  V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 72  PAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 131

Query: 130 HGRPGIGATHSSRFIPLK 147
           HGRPG+GAT+SSRFIPLK
Sbjct: 132 HGRPGVGATNSSRFIPLK 149


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score =  165 bits (402), Expect = 8e-42
 Identities = 82/144 (56%), Positives = 103/144 (71%), Gaps = 6/144 (4%)

Query: 10  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 69
           KKR F+KF++RG ++D LL M N  L +L +         GLK++P+ L+KKLRRAKKEA
Sbjct: 17  KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76

Query: 70  PPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 127
               K  PE+VKTHLRNMIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K 
Sbjct: 77  SDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKK 136

Query: 128 VKHGRPGIGA----THSSRFIPLK 147
           V H RP I        S+RFIPL+
Sbjct: 137 VNHHRPRICGCCCFRRSTRFIPLR 160


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
          similar to SP|Q08112 40S ribosomal protein S15
          {Arabidopsis thaliana}
          Length = 70

 Score = 66.9 bits (156), Expect = 5e-12
 Identities = 32/58 (55%), Positives = 39/58 (67%)

Query: 10 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 67
          KKRIF+KF++RGVDLD LLDM  E L++            G  RKPMAL+KKLR+A K
Sbjct: 12 KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 23/50 (46%), Positives = 29/50 (58%)

Query: 83  RNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 132
           R   I+PE V S V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 161 RRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 109 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 142
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


>At3g09270.1 68416.m01101 glutathione S-transferase, putative
           similar to glutathione transferase GB:CAA71784 [Glycine
           max]
          Length = 224

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 60  KKLRRAKKEA---PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGH 116
           +K+  A K+A   P +E+ + VK     +  + + +G  +  + G+T   V+I  + IG+
Sbjct: 107 EKVMLAVKKACWGPESEREKEVKEAYEGLKCLEKELGDKL-FFGGETIGFVDIAADFIGY 165

Query: 117 YLGEF 121
           +LG F
Sbjct: 166 WLGIF 170


>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
            family protein contains 3 WD-40 repeats (PF00400); some
            similarity to s-tomosyn isoform (GI:4689231)[Rattus
            norvegicus]; contains non-consensus AT-AC splice sites at
            intron 18
          Length = 1606

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 88   VPEMVGSIVGIYNGKT---FNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFI 144
            +P +V   +G+Y G      N VEIK + +    G  S+  KPV      + A  SS  +
Sbjct: 1040 IPSIVADHIGVYLGCVKGRVNVVEIKEDSLVSKPGGLSLLGKPVSDKPLALPAGESSSMM 1099

Query: 145  PLK 147
             L+
Sbjct: 1100 GLE 1102


>At1g66980.1 68414.m07616 protein kinase family protein /
           glycerophosphoryl diester phosphodiesterase family
           protein similar to leaf rust resistance kinase Lr10
           GI:1680685 from [Triticum aestivum]; contains Pfam
           profiles PF03009: Glycerophosphoryl diester
           phosphodiesterase family, PF00069: Protein kinase domain
          Length = 1109

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 79  KTHLRN-MIIVPEMVGSIVGIYN-GKTFNQVEIKPEMIGHYLGEFSVTYKP 127
           +THLRN  IIVPE + S+ GI+    T+++++     I +   E  ++  P
Sbjct: 428 QTHLRNRSIIVPE-ISSVAGIFTFSLTWHEIQSLTPAISNPFRENGMSRNP 477


>At2g17580.1 68415.m02034 polynucleotide adenylyltransferase family
           protein similar to SP|P13685 Poly(A) polymerase (EC
           2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 757

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 52  KRKPMALVKKL-RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSI 95
           K +  ++V+ L RR  KEAP +E P+  KT  R+     E VGS+
Sbjct: 614 KNQDQSVVQMLKRRRSKEAPVSEPPK-QKTSKRSRSDDQEAVGSL 657


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,488
Number of Sequences: 28952
Number of extensions: 128228
Number of successful extensions: 292
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 13
length of query: 147
length of database: 12,070,560
effective HSP length: 75
effective length of query: 72
effective length of database: 9,899,160
effective search space: 712739520
effective search space used: 712739520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)