GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001470-TA|BGIBMGA001470-PA|IPR000313|PWWP
         (1944 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    32   0.053
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    30   0.16 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    29   0.37 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    29   0.37 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    29   0.37 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   1.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   3.5  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    26   3.5  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    26   3.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   6.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   8.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   8.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   8.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 31.9 bits (69), Expect = 0.053
 Identities = 40/194 (20%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 626 PDIR-SPIKIN-KVERHPEITTEPRKTDNNSVENQVLNQEKAEISISKPRP---EIIEKI 680
           P IR +P K   K+E+ P     PR T++NS++++  N + +  +         +I  K+
Sbjct: 193 PSIRITPAKKRIKLEQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKM 252

Query: 681 VTPKKI--YEPRYMNESTASAVDALLSVSREADRVTRVISNDPPEDLFEDDNKDSLN--I 736
           +TP K    +   M++ +   +        +   +T        ED+  DD K  L+  +
Sbjct: 253 LTPIKSEPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDDIKTELSTGM 312

Query: 737 NGNYLQNMEYDNGNSDRVNEPITTIEKDKAELEKIIDNNIIQTRICSDESTQPSTLSKMQ 796
           N +     E +  N  +++     + +   +L+  ID  I+    C DE        ++ 
Sbjct: 313 NDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGID--ILDDVKCEDERVISIPDKEIT 370

Query: 797 IDDTNQDIESNDGS 810
           +    + I+ N+G+
Sbjct: 371 VPSNEETIDINNGA 384



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 15/173 (8%)

Query: 1477 VTSEPKKIVQTIHKTTTEPLIFLQQKSGTMMQLTAAQFEHLQKTGQIVQKPATPAQEKKI 1536
            VT+E   +V  +  T   P   +   SGT + +T+            V+K      + +I
Sbjct: 824  VTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQI 883

Query: 1537 L----IQKSITIPQNETAVTQIQKSRARKQITESPAPLKKIKQEIAIAPAPSPNSVPMPV 1592
                  +K+  I     AV +   +++  Q  +   P      +I ++ +    ++ +  
Sbjct: 884  TTNTPAKKATNIGGKPVAVVK-SSAQSLLQSNQQHFP----HHQIQVSTSAGLQTIRLSG 938

Query: 1593 LAPLSSGPSVASTTANAFPQTTSTYTEYENFEELLPSTAIAKQVESVVSQPEQ 1645
             + L S  SV +++A+     T+      N   +LP   +  Q +S  SQ +Q
Sbjct: 939  HSVLHSAQSVVASSASNVTNVTT------NLTTILPPVKVQSQQQSQQSQQQQ 985


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 720 DPPEDLFEDDNKDSLNINGNYLQNMEYDNGNSDRVNEPITTIEKDKAE-LEKIIDNNIIQ 778
           D P   FED ++ S N N N L    + +G    +   +  + +  A  L +I +  ++ 
Sbjct: 11  DFPSLSFEDSDEGS-NWNWNTLLRPNFLDGWYQTLQTHMKKVREQMAGILSRIPEQGVVN 69

Query: 779 TRICSDESTQPSTLSKMQ-----IDDTNQDIESNDGS----VKEVDV-PMNHTVMPIETV 828
                + +   ST   +      I++T     S+D S    V+ +DV P N T++   + 
Sbjct: 70  WNKIPEGANTTSTTKIIDGHVVTINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSS 129

Query: 829 PSESDLQIAETLINLPSTAIQS 850
            ++SD+    TLI    T+ QS
Sbjct: 130 EADSDVTTLPTLIGKNETSTQS 151


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 700 VDALLSV-SREADRVTRVISNDPPEDLFEDDNKDSLNINGNYLQNMEYDNGNSDRVNEPI 758
           VD +L + S E D++    + D P   FED ++ S N N N L    + +G    +   I
Sbjct: 35  VDTVLVLPSIERDQMMAA-TFDFPSLSFEDSDEGS-NWNWNTLLRPNFLDGWYQTLQSAI 92

Query: 759 TTIEKDKAE-----LEKIIDNNIIQTRICSDESTQPSTLSKMQ-----IDDTNQDIESND 808
           +   K   E     L +I +  ++      + +   ST   +      I++T     S+D
Sbjct: 93  SAHMKKVREQMAGILSRIPEQGVVNWNKIPEGANTTSTTKIIDGHVVTINETTYTDGSDD 152

Query: 809 GS----VKEVDV-PMNHTVMPIETVPSESDLQIAETLINLPSTAIQS 850
            S    V+ +DV P N T++   +  ++SD+    TLI    T+ QS
Sbjct: 153 YSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETSTQS 199


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 700 VDALLSV-SREADRVTRVISNDPPEDLFEDDNKDSLNINGNYLQNMEYDNGNSDRVNEPI 758
           VD +L + S E D++    + D P   FED ++ S N N N L    + +G    +   I
Sbjct: 35  VDTVLVLPSIERDQMMAA-TFDFPSLSFEDSDEGS-NWNWNTLLRPNFLDGWYQTLQSAI 92

Query: 759 TTIEKDKAE-----LEKIIDNNIIQTRICSDESTQPSTLSKMQ-----IDDTNQDIESND 808
           +   K   E     L +I +  ++      + +   ST   +      I++T     S+D
Sbjct: 93  SAHMKKVREQMAGILSRIPEQGVVNWNKIPEGANTTSTTKIIDGHVVTINETTYTDGSDD 152

Query: 809 GS----VKEVDV-PMNHTVMPIETVPSESDLQIAETLINLPSTAIQS 850
            S    V+ +DV P N T++   +  ++SD+    TLI    T+ QS
Sbjct: 153 YSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETSTQS 199


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 700 VDALLSV-SREADRVTRVISNDPPEDLFEDDNKDSLNINGNYLQNMEYDNGNSDRVNEPI 758
           VD +L + S E D++    + D P   FED ++ S N N N L    + +G    +   I
Sbjct: 35  VDTVLVLPSIERDQMMAA-TFDFPSLSFEDSDEGS-NWNWNTLLRPNFLDGWYQTLQSAI 92

Query: 759 TTIEKDKAE-----LEKIIDNNIIQTRICSDESTQPSTLSKMQ-----IDDTNQDIESND 808
           +   K   E     L +I +  ++      + +   ST   +      I++T     S+D
Sbjct: 93  SAHMKKVREQMAGILSRIPEQGVVNWNKIPEGANTTSTTKIIDGHVVAINETTYTDGSDD 152

Query: 809 GS----VKEVDV-PMNHTVMPIETVPSESDLQIAETLINLPSTAIQS 850
            S    V+ +DV P N T++   +  ++SD+    TLI    T+ QS
Sbjct: 153 YSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETSTQS 199


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 14/157 (8%)

Query: 1059 RTTPNKNVINNMTSEISTSSDKIILSRTNNPAQDPSSVQTYTIKTSPEVSSDANTIIIQQ 1118
            R  P  N      S  STS  +I++S +       SSV T  +  SP +    N +++ +
Sbjct: 237  RLEPGTNKNGKFFSRSSTS--RIVISESLKHFTIQSSVTTSKMMVSPRLYDRQNGLVLSR 294

Query: 1119 ------KIRKVAKPPAKLQKIRPQNSLIVPMNEKKTLNNSTPTDDTMFDINSMPIVLSED 1172
                  K+ K +KP   +       +L+   N   +         T   +NS  IV    
Sbjct: 295  MNLTLAKMEKTSKPLPMVDNPESTGNLVYIYNNPFSDVEERRVSKTA--MNSNQIVSDNS 352

Query: 1173 LLTAENIEKMPVVMSGNSTVSNPSKLIKTKITSEAND 1209
            L ++E   K   +++  + +S+ S  I    +SE ND
Sbjct: 353  LSSSEEKLKQD-ILNLRTDISSSSSSIS---SSEEND 385


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 924 KSENLNAAKSLVQMSETIDHQINIIESNQNSDKKMSNTKAFKIEDQSFDSVIEQKVSLLS 983
           K   L A   L  +  T+D     +E NQN  + + + K   I+ ++ D  I ++   + 
Sbjct: 387 KISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIE 446

Query: 984 NSDNN 988
           N   N
Sbjct: 447 NEQLN 451


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 842 NLPSTAIQSKPN-EHHENLTMQLAIETEKDHQIILKSNENVPSEQVSPSLGAKSFST 897
           NL +T +Q +P+ E  +N        +  D+        NVP E+  PSL  + F T
Sbjct: 25  NLVNTVLQPRPSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQT 81


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 842 NLPSTAIQSKPN-EHHENLTMQLAIETEKDHQIILKSNENVPSEQVSPSLGAKSFST 897
           NL +T +Q +P+ E  +N        +  D+        NVP E+  PSL  + F T
Sbjct: 27  NLVNTVLQPRPSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQT 83


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 708 READRVTRVISNDPPEDLFEDDNKDSLNINGNY--LQNMEYDN 748
           RE  R  ++IS+   + +  ++N ++ N N NY    N  Y+N
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNN 348


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 348 VPADVVVIVEKKSDDSPITEKAESSSDSKYEFC 380
           VP+ + V+  KK    P+       S +KYE C
Sbjct: 92  VPSSLNVVTNKKGKGGPLLRPYPDWSFAKYEDC 124


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 734 LNINGNYLQNMEYDNGNS 751
           +N +GNY+ N E  NG S
Sbjct: 36  VNFDGNYINNFETSNGIS 53


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
            protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 1193 SNPSKLIKTKITSEANDKVPISATPTKPEVKTLLMNPVSEV 1233
            S+  K+I +K  S+AN   P S      E++ L M+P+  +
Sbjct: 343  SDDKKVISSKSGSKANSPFPGSTEADIIELQDLRMSPLPSI 383


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 896 STEIVPMKDSITATGNGNVNYRYETEQEKSENLNAAKSLVQMSETIDHQINIIESN 951
           STE+  +  S++   +  ++    T+ E S+ +NA  S ++ S  +      I +N
Sbjct: 528 STELADLDISLSENLSSGLSISDSTKPETSKGINAEPSNIEESNNMTDSFTRIANN 583


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.125    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,003
Number of Sequences: 429
Number of extensions: 25554
Number of successful extensions: 97
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 29
length of query: 1944
length of database: 140,377
effective HSP length: 68
effective length of query: 1876
effective length of database: 111,205
effective search space: 208620580
effective search space used: 208620580
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 51 (24.6 bits)