GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001469-TA|BGIBMGA001469-PA|IPR005055|Insect
pheromone-binding protein A10/OS-D
         (106 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   2.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   2.6  
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    25   2.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    24   4.5  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 28   ALDEALNDKRFIQRQLKCALGEAPCDPIGKRLKTL 62
            ++D+A++ K  IQ+ L+ A G+A    I  RLKT+
Sbjct: 1385 SVDDAMDQK--IQKTLREAFGDATMLCIAHRLKTI 1417


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 52  CDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQ 90
           C P+ KR+ +LAP   R A    S +E  Q +K +  ++
Sbjct: 507 CIPVSKRILSLAPAYFREAL-STSDEEWSQHRKIIDTLE 544


>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 125

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 30 DEALNDKRFIQRQLKCALGEAPCDPIGKRLKTLAP 64
          D+ L+ K F +   +C+L E  C  +     +LAP
Sbjct: 57 DDVLSPKLFAKNSYRCSLKETKCIDVIVSHNSLAP 91


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 83  QKTLSYVQRNFPQHWAKLVRQY 104
           Q +L Y+QR    HW+ L  Q+
Sbjct: 55  QGSLIYLQRYIVHHWSPLFEQF 76


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,900
Number of Sequences: 5004
Number of extensions: 12439
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 4
length of query: 106
length of database: 2,362,478
effective HSP length: 63
effective length of query: 43
effective length of database: 2,047,226
effective search space: 88030718
effective search space used: 88030718
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)