GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001468-TA|BGIBMGA001468-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
         (487 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   1.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   2.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   2.8  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   4.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   4.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   4.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   6.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc
          finger protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 24 KPPMDTPTPQASAPSNPKKRRKTSN 48
          K P   P+P ++  S P +R  TSN
Sbjct: 69 KSPQGAPSPSSTPSSLPTQRTSTSN 93


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 273 MGPNNSIMSSNPMQNSVMGPGHCGPMRH 300
           +G N   MS    Q S MG  H  PM H
Sbjct: 342 LGENMMDMSLTRHQISSMGHSHAHPMHH 369


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 273 MGPNNSIMSSNPMQNSVMGPGHCGPMRH 300
           +G N   MS    Q S MG  H  PM H
Sbjct: 342 LGENMMDMSLTRHQISSMGHSHAHPMHH 369


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 275 PNNSIMSSNPMQNSVMGPGHCGPM 298
           P++S+    P+ + V  PG  GP+
Sbjct: 75  PSSSLSYGGPVNDDVRSPGTPGPL 98


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 275 PNNSIMSSNPMQNSVMGPGHCGPM 298
           P++S+    P+ + V  PG  GP+
Sbjct: 231 PSSSLSYGGPVNDDVRSPGTPGPL 254


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 395 VSAGKV-YPPDQPMVFNPQNPN 415
           V  GK   PP  P+  +P++PN
Sbjct: 96  VPGGKAEVPPSNPIYIHPESPN 117


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 15  GPGLGPPDFKPPMDTPTPQASAPSNPKKRRKTSNAS 50
           G  +  P  +  +  P PQ ++PSN      ++N++
Sbjct: 404 GVNVPVPPMQSQIINPQPQITSPSNTNTSTSSTNSN 439


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.134    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,081
Number of Sequences: 317
Number of extensions: 2566
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 487
length of database: 114,650
effective HSP length: 59
effective length of query: 428
effective length of database: 95,947
effective search space: 41065316
effective search space used: 41065316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)