Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001468-TA|BGIBMGA001468-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 34 0.051
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 32 0.21
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 30 0.63
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 30 0.83
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 29 1.1
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 29 1.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 29 1.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 28 2.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.4
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 33.9 bits (74), Expect = 0.051
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 396 SAGKVYPPDQ--PMVFNPQNPNAPPIYP-------CGVCHK-EVHDNDQAILCESGCNFW 445
S KV+ P+ P+V P P P C VC + + ++ + C+ GCN
Sbjct: 200 SGRKVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKCSVCQRLQSPPKNRIVFCD-GCNTP 258
Query: 446 FHRGCTGLSEPAF-QLLTAEVYAEWVCDKCL-SSKNIPLV 483
FH+ C EP L EW CD C+ K PLV
Sbjct: 259 FHQLC---HEPYISDELLDSPNGEWFCDDCIRRKKQAPLV 295
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKC 474
C VC + I+ GCN +H+ C P +V AEW C KC
Sbjct: 193 CSVCQRGHSPLSNRIVFCDGCNSPYHQLCH--HPPIDDATVQDVDAEWFCMKC 243
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCL 475
C +C++ +N AI+ CN H+ C G+ E +W C KCL
Sbjct: 197 CVICNEAECENSNAIVFCDNCNTSVHQNCYGIP------FVPE--GQWFCKKCL 242
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 29.9 bits (64), Expect = 0.83
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 258 PRMNGPMGPSCSNGSMGPNN-SIMSSNPMQNSVMGP 292
P NGP P+ NG++G NN S M+S N + P
Sbjct: 107 PASNGPTPPNPGNGNVGLNNPSYMNSQASPNIMNAP 142
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 418 PIYPCGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKC 474
P+Y C +C K D + C+ GC WFH C + E ++ LT + + C KC
Sbjct: 118 PLY-C-ICQKP-DDGSWMLGCD-GCEDWFHGTCVNIPE-SYNDLTVQYF----CPKC 165
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 434 QAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKC 474
Q ILCE WFH C + + AE + VC +C
Sbjct: 140 QCILCED----WFHEKCLQKTNKGIAIPDAETFEWLVCSEC 176
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 424 VCHKEVHDNDQAILCESGCNFWFHRGCTGLSE 455
VC + D + C+ GC+ W H C GL++
Sbjct: 24 VCKSQEDIGDTWVQCD-GCDCWQHASCVGLAD 54
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 424 VCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSK 478
+C + +D + C + C WFH C GLS L + + C C S +
Sbjct: 1458 LCRQPFAISDGTVQCHN-CLEWFHYECVGLSSDIVSTL-----SNYACPDCCSKE 1506
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 14 PGPGLGPPDFKPPMDTPTPQASAPSNPKKRRKTSNASN 51
P P PP F+PP P P P KKR+ + A +
Sbjct: 9 PPPPPPPPGFEPPSQPPPP--PPPGYVKKRKNKTPAQS 44
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,345
Number of Sequences: 5004
Number of extensions: 40001
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 12
length of query: 487
length of database: 2,362,478
effective HSP length: 76
effective length of query: 411
effective length of database: 1,982,174
effective search space: 814673514
effective search space used: 814673514
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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