Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001468-TA|BGIBMGA001468-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 38 0.024
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 34 0.22
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 33 0.67
01_05_0230 + 19543410-19543722,19544165-19544238 33 0.67
07_01_0479 + 3606663-3607448 32 0.89
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 31 1.6
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 31 1.6
10_08_0026 - 14253680-14253894,14253981-14254109,14254704-142547... 31 2.7
09_03_0178 + 13127669-13127741,13127831-13128173,13128308-131283... 31 2.7
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 2.7
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 30 3.6
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 30 4.8
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 30 4.8
03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085 30 4.8
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 30 4.8
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 29 6.3
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 29 6.3
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 29 6.3
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 29 8.3
07_01_0623 + 4638952-4639024,4640422-4640439,4641312-4641660,464... 29 8.3
04_03_0904 + 20717005-20718087 29 8.3
01_05_0490 + 22672241-22674679 29 8.3
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 37.5 bits (83), Expect = 0.024
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 422 CGVCHKEVHDNDQA-ILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKC 474
C VC K D++ ++C C W H C G+SE +Q ++ ++ C C
Sbjct: 276 CPVCLKVYRDSEVIPMVCCDVCEKWVHIECDGISEEKYQQFQSDQNLQYTCGAC 329
>02_05_0405 +
28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 34.3 bits (75), Expect = 0.22
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 7 GMPSYRLPG---PGLGPPDFKPPMDTPTPQASAPSNPKKRR 44
G P++R PG P PP +PP PTP A AP+ +KR+
Sbjct: 31 GAPAFRFPGFSAPPTPPPAAQPP--PPTPPAPAPAAEEKRK 69
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 3 HNLAGMPSYRLPGPGLGPPDFKPPMDTPTPQASAPSNPKKRRKTSNASN 51
H+L +P + PP PP+ P P A+AP+ K+ +++AS+
Sbjct: 52 HSL-DLPKHHRRSSSSSPPPMPPPLPPPPPSANAPTLGKESPSSNSASD 99
>01_05_0230 + 19543410-19543722,19544165-19544238
Length = 128
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 12 RLPGPGLGPPDFKPPMDTPTPQASAPSNPKKRRKTSNAS 50
R P P PP PP PTP +S S + + SNA+
Sbjct: 57 RRPSPPPAPPSTPPPASPPTPLSSTESGRRGEGRGSNAA 95
>07_01_0479 + 3606663-3607448
Length = 261
Score = 32.3 bits (70), Expect = 0.89
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 7 GMPSYRLPG--PGLGPPDFKPPMDTPTPQASAP-SNP 40
GMP PG PG+ PP F+P M P P P NP
Sbjct: 223 GMPGGPPPGMRPGMPPPPFRPGMPPPPPGPQQPGQNP 259
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 433 DQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSKN 479
D +LC GC FH C G+ E LL W C +CL KN
Sbjct: 452 DGNLLCCDGCPAAFHSKCVGVVE---DLLPE---GNWFCPECLIQKN 492
Score = 31.5 bits (68), Expect = 1.6
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSK 478
CG C KEV +D A+ C+ C FH+ F++ A +VC+KCLS K
Sbjct: 1137 CGHCDKEVKISD-AVNCQY-CEALFHK-------KHFKVPRGATDAYYVCNKCLSEK 1184
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 432 NDQAILCESG-CNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSKNIP 481
ND I CE CN H GC +SE + E+ + CD C ++ P
Sbjct: 133 NDSMIKCEGPQCNTQQHVGCVIISEKPADSVPPELPPHFYCDMCRITRADP 183
>10_08_0026 -
14253680-14253894,14253981-14254109,14254704-14254769,
14254887-14255133
Length = 218
Score = 30.7 bits (66), Expect = 2.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 17 GLGPPDFKPPMDTPTPQASAPSNP 40
GL PP PP P+P +S+P+ P
Sbjct: 158 GLSPPGSPPPPPPPSPSSSSPATP 181
>09_03_0178 +
13127669-13127741,13127831-13128173,13128308-13128376,
13129706-13129844,13130010-13130021
Length = 211
Score = 30.7 bits (66), Expect = 2.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 425 CHKEVHDNDQAILCESGCNFWFHRGCTGLS 454
C + +D + CE GC WFH C G++
Sbjct: 143 CEMPYNPDDLMVQCE-GCKDWFHPSCMGMT 171
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 30.7 bits (66), Expect = 2.7
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 421 PCGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKC 474
PC +C + +D C + C H C + A Q +A W C KC
Sbjct: 108 PCLICFDPIRPSDPVWSCSASCFALLHLHC--IQSWAHQSSSAAPSPTWGCPKC 159
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 30.3 bits (65), Expect = 3.6
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 9 PSYRLPGPGLGPPDFKPPMDTPT-----PQASAPSNPKKRRKTSNAS 50
PS + P PG PP PP TP+ SAPS P + A+
Sbjct: 1145 PSSQSPPPGSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPAN 1191
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 6 AGMPSYRLPGPGLGPPDFKPPMDTPTPQASAPSNP 40
A P+Y P P PP + PP P PQ P P
Sbjct: 45 AAYPTY--PPPPADPPQYAPPPAAPQPQPYYPYEP 77
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 29.9 bits (64), Expect = 4.8
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 424 VCHKEVHDNDQAILCESGCNFWFHRGCTGLSE 455
VC + D ++ I C++ C+ W H C G+++
Sbjct: 642 VCGAQDDDGERMIACDA-CDVWHHTRCVGIAD 672
>03_05_0864 -
28362146-28362500,28362585-28362629,28362727-28363085
Length = 252
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 20 PPDFKPPMDTPTPQASAPSNPKKRRKTSNAS 50
PP+ +PP TPT Q S + P+ R + + A+
Sbjct: 36 PPEQQPPTPTPTQQQSMQAQPQARPRRAPAA 66
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 14 PGPG-LGPPDFKPPMDTPTPQASAPSNPKKRRKTSNA 49
P PG L PP PP P+P ++ PS+P S++
Sbjct: 36 PAPGSLSPPSLTPPA-APSPPSTTPSSPAAAAAASSS 71
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 29.5 bits (63), Expect = 6.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 6 AGMPSYRLPGPGLGPPDFKPPMDTPTPQASAP-SNPKKR-RKTSNASN 51
+G S + P P GP P + P P+ S+P P+KR R S AS+
Sbjct: 14 SGSSSMKPPRPPRGPSFQAPAVPRPLPEPSSPGGRPRKRVRFASEASS 61
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 29.5 bits (63), Expect = 6.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 425 CHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSK 478
C + D ++ + C+ C W H C+G+S+ F +V +++C KC S +
Sbjct: 625 CGAKDDDGERMLACDV-CGVWQHTRCSGISD--FD----DVPEKFICRKCASPR 671
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 29.5 bits (63), Expect = 6.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 20 PPDFKPPMDTPTPQASAPSNPKKRRKTSNASN 51
PP KPP P +S P PK+RR +S A++
Sbjct: 27 PPKAKPP--PPPSSSSGPKKPKQRRLSSAAAD 56
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 29.1 bits (62), Expect = 8.3
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 419 IYPCGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSK 478
+YPC C K+V D I C S C H+ CT S + + + C CL +
Sbjct: 1320 VYPCTSCKKDVSFRD-IIKC-SSCQGNCHKECTLRSVGSKE---GNAASSLTCKLCLQKR 1374
Query: 479 NIPLVKF 485
++ L +
Sbjct: 1375 SLMLTNY 1381
>07_01_0623 +
4638952-4639024,4640422-4640439,4641312-4641660,
4643917-4643985,4645587-4645722,4646835-4646870
Length = 226
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 425 CHKEVHDNDQAILCESGCNFWFHRGCTGLS 454
C + +D I CE C+ WFH C G++
Sbjct: 151 CEMPYNPDDLMIQCEE-CSDWFHPSCIGMT 179
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 9 PSYRLPGPGLGPPDFKP-PMDTPTPQASAPSNP 40
P+Y+ PP +KP P TPTP P+ P
Sbjct: 144 PTYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPP 176
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.1 bits (62), Expect = 8.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 11 YRLPG--PGLGPPDFKPPMDTPTPQASAPSNPKKR 43
Y LP P + PP PP P P A+AP + KKR
Sbjct: 498 YPLPSSSPAMFPPGTPPP-PPPLPPATAPRSKKKR 531
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.134 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,969,314
Number of Sequences: 37544
Number of extensions: 302854
Number of successful extensions: 1667
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1642
Number of HSP's gapped (non-prelim): 45
length of query: 487
length of database: 14,793,348
effective HSP length: 85
effective length of query: 402
effective length of database: 11,602,108
effective search space: 4664047416
effective search space used: 4664047416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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