GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001468-TA|BGIBMGA001468-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
         (487 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    35   0.006
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    29   0.21 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   2.0  

>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 419 IYPCGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSK 478
           +  C  C+    D+  ++ C   C    H  CTGLS  + + L       W+C  C   +
Sbjct: 34  VMQCSTCNAPT-DSANSVSCAGVCGSKHHTHCTGLSRDSTRELGRNNQLLWLCKNCNEFR 92

Query: 479 N 479
           N
Sbjct: 93  N 93


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSKNIP 481
           C  C + +      I C + C+  FHRGC  L       + + V   W C  C +    P
Sbjct: 16  CFSCAEPLEATGCIISC-AYCDATFHRGCCKLPPELIDAVLSNVDLHWSCIGCTNMLKNP 74


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 14  PGPGL--GPPDFKPPMDTPTPQASAPSNPKKRR 44
           P PG+  GP   +PP +   P+   P+ P+  R
Sbjct: 181 PNPGMPPGPQMMRPPGNVGPPRTGTPTQPQPPR 213


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.134    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,278
Number of Sequences: 2123
Number of extensions: 9705
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 487
length of database: 516,269
effective HSP length: 67
effective length of query: 420
effective length of database: 374,028
effective search space: 157091760
effective search space used: 157091760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)