Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001468-TA|BGIBMGA001468-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
(487 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 36 0.046
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 36 0.046
At5g01480.1 68418.m00061 DC1 domain-containing protein contains ... 36 0.060
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 36 0.080
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 35 0.14
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 34 0.18
At1g33710.1 68414.m04168 expressed protein ; expression supporte... 34 0.18
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 34 0.18
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 34 0.24
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 34 0.24
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to... 33 0.32
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 33 0.43
At1g26150.1 68414.m03192 protein kinase family protein similar t... 33 0.43
At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjac... 32 0.74
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 32 0.98
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 32 0.98
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 32 0.98
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ... 32 0.98
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 31 1.3
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 31 1.3
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 31 1.3
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ... 31 1.3
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 31 1.7
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 31 1.7
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 31 2.3
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 31 2.3
At5g05610.2 68418.m00611 PHD finger family protein contains Pfam... 31 2.3
At5g05610.1 68418.m00610 PHD finger family protein contains Pfam... 31 2.3
At2g23990.2 68415.m02866 plastocyanin-like domain-containing pro... 31 2.3
At2g23990.1 68415.m02865 plastocyanin-like domain-containing pro... 31 2.3
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 31 2.3
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 31 2.3
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 31 2.3
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 30 3.0
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 30 3.0
At3g24010.1 68416.m03016 PHD finger family protein contains Pfam... 30 3.0
At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) fa... 30 3.0
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 30 4.0
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ... 30 4.0
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ... 30 4.0
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ... 30 4.0
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 29 5.2
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ... 29 5.2
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 29 5.2
At5g05910.1 68418.m00653 zinc finger (C3HC4-type RING finger) fa... 29 5.2
At3g49260.2 68416.m05384 calmodulin-binding family protein low s... 29 5.2
At3g49260.1 68416.m05383 calmodulin-binding family protein low s... 29 5.2
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 29 6.9
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 29 6.9
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot... 29 6.9
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 29 6.9
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ... 29 9.2
At5g13210.1 68418.m01516 expressed protein 29 9.2
At5g07190.1 68418.m00819 embryo-specific protein 3, putative sim... 29 9.2
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 29 9.2
At3g28650.1 68416.m03576 DC1 domain-containing protein similar ... 29 9.2
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 29 9.2
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 29 9.2
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 36.3 bits (80), Expect = 0.046
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSKN 479
C VC D I+ GC+ H C G P L+ A +W C +CLSSKN
Sbjct: 153 CAVCQSTDGDPLNPIVFCDGCDLMVHASCYG--NP---LVKAIPEGDWFCRQCLSSKN 205
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 36.3 bits (80), Expect = 0.046
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSKN 479
C VC D I+ GC+ H C G P L+ A +W C +CLSSKN
Sbjct: 153 CAVCQSTDGDPLNPIVFCDGCDLMVHASCYG--NP---LVKAIPEGDWFCRQCLSSKN 205
>At5g01480.1 68418.m00061 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 413
Score = 35.9 bits (79), Expect = 0.060
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 399 KVYPPDQPMVFNPQNP-NAPPIYPCGVCHKEVHDNDQAILC-ESGCNFWFHRGCTGLSE 455
KV + + F P P P + CGVCH ++++N C + GC + H C S+
Sbjct: 226 KVSRHNHRLTFTPNLPYEEPTVTDCGVCHAKINENYGEYSCTKKGCVYAVHSRCAMQSD 284
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 35.5 bits (78), Expect = 0.080
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 403 PDQP-MVFNPQNPNAPPIYPCGVCH-KEVHDNDQAILCESGCNFWFHRGC 450
P QP M+ + P+ PP+ C C K++ N+ C + CN FHRGC
Sbjct: 20 PAQPHMLCRRRRPSHPPLSICFSCKGKQLKRNNYYYYCAT-CNLEFHRGC 68
Score = 28.7 bits (61), Expect = 9.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 417 PPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
P + CGVC + V N C+ C++ H C
Sbjct: 273 PGDFSCGVCRQTVDVNYGQYSCDKECHYAVHSKC 306
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 34.7 bits (76), Expect = 0.14
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 422 CGVCHKEVHDNDQAI-LCESGCNFWFHRGCTGLSEPAFQLLTAEVY 466
CG+C + H +D +C GC+ W H C ++ F+ L Y
Sbjct: 351 CGICKRIWHPSDDGDWVCCDGCDVWVHAECDNITNERFKELEHNNY 396
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 34.3 bits (75), Expect = 0.18
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 399 KVYPPDQPMVFNPQNPNAPPIYPCGVCHKEVH--DNDQAILCESGCNFWFHRGCTGLSEP 456
K P ++ P + P + CG+C + + D+ + C+ GC W H C +S
Sbjct: 393 KALIPGDQLLCQPCSKLTKPKHVCGICKRIWNHLDSQSWVRCD-GCKVWIHSACDQISHK 451
Query: 457 AFQLLTAEVYAEWVCDKC 474
F+ L ++ C C
Sbjct: 452 HFKDLGE---TDYYCPTC 466
>At1g33710.1 68414.m04168 expressed protein ; expression supported
by MPSS
Length = 210
Score = 34.3 bits (75), Expect = 0.18
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 422 CGVCHKEVHDNDQAIL-CESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDK 473
CG+C ++ D D L CE C W H L PAF + +W +
Sbjct: 90 CGLCSLDIEDRDHLFLTCEFACFLW-HTVSVRLELPAFSFVVWNDLMDWTLQR 141
>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
family protein / SET domain-containing protein similar
to trithorax-like protein 1 [Arabidopsis thaliana]
GI:12659210; contains Pfam domain, PF00628: PHD-finger
and PF00856: SET domain
Length = 1056
Score = 34.3 bits (75), Expect = 0.18
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 396 SAGKVYPPDQPMVFNPQNPNAPPIYPCGVCH-KEVHDNDQAILCESGCNFWFHRGCTGLS 454
S+GK D P + P + C VCH E ++N+ + C+ C H C G
Sbjct: 570 SSGKYQ--DHPTGYRPVRVEWKDLDKCNVCHMDEEYENNLFLQCDK-CRMMVHTRCYGQL 626
Query: 455 EPAFQLLTAEVYAEWVCDKC 474
EP +L W+C+ C
Sbjct: 627 EPHNGIL-------WLCNLC 639
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 33.9 bits (74), Expect = 0.24
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 422 CGVCHKEVHDNDQA-ILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKC 474
C VC K D++ ++C C W H C G+S+ + + ++ C C
Sbjct: 299 CPVCLKVYRDSEATPMVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTC 352
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 33.9 bits (74), Expect = 0.24
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 413 NPNAPP-IYPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
+P+ P IYPCGVC + C GC++ H C
Sbjct: 300 SPSLPSGIYPCGVCRLTIDVTYGQFSCNRGCHYAVHSKC 338
>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
trithorax-like protein 1 GI:12659210 from [Arabidopsis
thaliana]; characterized in Alvarez-Venegas R,et al,
ATX-1, an Arabidopsis Homolog of Trithorax, Activates
Flower Homeotic Genes.(Curr Biol. 2003 Apr
15;13(8):627-37 PMID: 12699618); contains Pfam profiles
PF00856: SET domain, PF00855: PWWP domain, PF00628,
PHD-finger; identical to cDNA trithorax-like protein 1
(TRX1) GI:12659209
Length = 1062
Score = 33.5 bits (73), Expect = 0.32
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 404 DQPMVFNPQNPNAPPIYPCGVCH-KEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLT 462
+QP + P + + C VCH E ++N+ + C+ C H C G EP L
Sbjct: 594 NQPTGYRPVRVDWKDLDKCNVCHMDEEYENNLFLQCDK-CRMMVHAKCYGELEPCDGAL- 651
Query: 463 AEVYAEWVCDKC 474
W+C+ C
Sbjct: 652 ------WLCNLC 657
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 33.1 bits (72), Expect = 0.43
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 422 CGVCHKEVHDNDQA-ILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKC 474
C VC K D++ ++C C W H C G+S+ + + ++ C C
Sbjct: 286 CPVCLKVYRDSESTPMVCCDICQRWVHCHCDGISDDKYMQFQVDGKLQYKCATC 339
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 33.1 bits (72), Expect = 0.43
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 9 PSYRLPGPGLGPPDFKPPMDTPTPQASAPSNPKKRRKTSNAS 50
PS LP P L PP PP P+P AS P + + AS
Sbjct: 163 PSNPLPPPKLVPPSHSPPRHLPSPPASEIPPPPRHLPSPPAS 204
Score = 28.7 bits (61), Expect = 9.2
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 9 PSYRLPGPGLGPPDFKPPMDTPTPQASAPSNPKKRRK 45
P LP P PP D+ P P +PK+R +
Sbjct: 194 PPRHLPSPPASERPSTPPSDSEHPSPPPPGHPKRREQ 230
>At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 196
Score = 32.3 bits (70), Expect = 0.74
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 425 CHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSKNI 480
C + +D + CE GC W+H C G++ + A+ +VC +C S ++
Sbjct: 113 CEMPYNPDDLMVQCE-GCKDWYHPACVGMT-----IEEAKKLDHFVCAECSSDDDV 162
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 31.9 bits (69), Expect = 0.98
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 417 PPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSE 455
P + CGVC + + N+ C GC++ H C E
Sbjct: 319 PGDFLCGVCRQTIDVNNGQYSCNKGCHYAVHSKCATRKE 357
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 31.9 bits (69), Expect = 0.98
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 403 PDQP-MVFNPQNPNAPPIYPCGVCH-KEVHDNDQAILCESGCNFWFHRGC 450
P QP + + P+ PP+ C C K++ + C + CN FHRGC
Sbjct: 20 PAQPHKLCRRRRPSYPPLSICFTCKGKQLRSSAYYYYCAT-CNLEFHRGC 68
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 31.9 bits (69), Expect = 0.98
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 420 YPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
+ CGVC + V N C GCN+ H C
Sbjct: 318 FSCGVCRQTVDINYGHYSCNKGCNYAVHSKC 348
>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 602
Score = 31.9 bits (69), Expect = 0.98
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGC 450
CGVC K+V +N C GC + H C
Sbjct: 249 CGVCRKKVDENYGGYSCVKGCYYVSHSRC 277
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 2 SHNLAGMPSYRLPGPGLGPPDFKPPMDTPTPQASAPSNPK 41
S + AG+P +LP PG P PP P PQ P PK
Sbjct: 247 SSSAAGLPPLKLP-PGRSAPP-PPPAAAPPPQPPPPPPPK 284
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 262 GPMGPSCSNGSMGPNNSIMSSNPMQNSVMGPGHCGPM 298
GPMGP G GP + PM S+MGPG GPM
Sbjct: 331 GPMGPGGPMGQGGPMGMMGPGGPM--SMMGPG--GPM 363
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 262 GPMGPSCSNGSMGPNNSIMSSNPMQNSVMGPGHCGPM 298
GPMGP G GP + PM S+MGPG GPM
Sbjct: 430 GPMGPGGPMGQGGPMGMMGPGGPM--SMMGPG--GPM 462
>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 31.5 bits (68), Expect = 1.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 417 PPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
P + CGVC K V N C GC++ H C
Sbjct: 265 PGDFSCGVCRKTVDVNYGQYSCIKGCHYAVHSHC 298
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 404 DQPMVFNPQNPNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSE 455
D P+VF + P C VC + + + L GC +FH GC LS+
Sbjct: 124 DHPLVFLKKRQEKTP---CEVCKNRILGSSYSCL---GCELYFHVGCIHLSK 169
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 9 PSYRLPGPGLGPPDFKPPMDTPTPQASAPSNPKKRRK 45
P ++ P P PP PP+ PTP S P P +K
Sbjct: 457 PVHKPPTPTYSPPIKPPPVKPPTPTYSPPVQPPPVQK 493
Score = 29.5 bits (63), Expect = 5.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 9 PSYRLPGPGLGPPDFKPPMDTPTPQASAPSNP 40
P + P P PP PP+ PTP S P P
Sbjct: 507 PIQKPPTPTYSPPIKPPPVKPPTPTYSPPIKP 538
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 9 PSYRLPGPGLGPPDFKPPMDTPTPQASAPSNP 40
P + P P PP PP+ PTP S P P
Sbjct: 323 PVQKPPTPTYSPPIKPPPVKPPTPIYSPPVKP 354
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 417 PPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGCT 451
P + CGVC ++V +N A CE +++ H C+
Sbjct: 295 PGNFSCGVCRQQVDNNYGAYSCEICDDYFVHSKCS 329
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 433 DQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSKNIPLVK 484
D ++LC GC +H C GL A LL +W C +C + P +K
Sbjct: 617 DGSLLCCDGCPAAYHSKCVGL---ASHLLPE---GDWYCPECAFDRRAPGLK 662
>At5g05610.2 68418.m00611 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSK 478
CG C + ND+ +C C W+H C ++ PA AE ++ C C + K
Sbjct: 188 CGSCGGN-YTNDEFWICCDVCERWYHGKCVKIT-PA----KAESIKQYKCPSCCTKK 238
>At5g05610.1 68418.m00610 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSK 478
CG C + ND+ +C C W+H C ++ PA AE ++ C C + K
Sbjct: 188 CGSCGGN-YTNDEFWICCDVCERWYHGKCVKIT-PA----KAESIKQYKCPSCCTKK 238
>At2g23990.2 68415.m02866 plastocyanin-like domain-containing
protein
Length = 226
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 9 PSYRLPGPGLGPPDFKPPMDTPTPQASAPSNPKKRRKTSNAS 50
P++ PGP P PP + TP A AP+ P K+S ++
Sbjct: 150 PNHPKPGPAAVTPTL-PPKPSTTPAAPAPAPPTPSPKSSTST 190
>At2g23990.1 68415.m02865 plastocyanin-like domain-containing
protein
Length = 207
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 9 PSYRLPGPGLGPPDFKPPMDTPTPQASAPSNPKKRRKTSNAS 50
P++ PGP P PP + TP A AP+ P K+S ++
Sbjct: 131 PNHPKPGPAAVTPTL-PPKPSTTPAAPAPAPPTPSPKSSTST 171
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 14 PGPGLGPPDFKPPMDTPTPQASAPSN 39
PGP LGPP +P TPT +PS+
Sbjct: 216 PGPVLGPPYSEPGPSTPTGSIPSPSS 241
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGC 450
CGVCH++V +N A C + ++ H C
Sbjct: 160 CGVCHQQVDNNYGAYSCNNCDGYFVHSKC 188
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 14 PGPGLGPPDFKPPMDTPTPQAS-APSNPKKRRKT 46
P P GPP P TP P APS PK KT
Sbjct: 111 PVPPHGPPPKPAPAPTPAPSPKPAPSPPKPENKT 144
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 30.3 bits (65), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 420 YPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
+ CGVC K+V +N A C +++ H C
Sbjct: 306 WSCGVCRKKVDNNCGAYTCNKCSHYFVHTRC 336
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 30.3 bits (65), Expect = 3.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 422 CGVCHKEVHDNDQAILCESG-CNFWFHRGCTGLSEPAFQ 459
C +C+ + N++ LCE CN FH C GL +Q
Sbjct: 152 CNMCNTNIKINEKQ-LCECRLCNILFHLDCVGLIPNVYQ 189
>At3g24010.1 68416.m03016 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 234
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 411 PQNPNAPPIYPCGVCHKEVHDNDQAILCESGCNF-WFHRGCTGLSEPAFQLLTAEVYAEW 469
P +PN P C +V + + C WFH GC GL E + +W
Sbjct: 172 PVDPNEPTYCICN----QVSFGEMVACDNNACKIEWFHFGCVGLKE--------QPKGKW 219
Query: 470 VCDKCLSSK 478
C +C + K
Sbjct: 220 YCPECATVK 228
>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type(RING finger)
Length = 358
Score = 30.3 bits (65), Expect = 3.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 410 NPQNPNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGCTG 452
NP++ ++P C +C + V D+ + C FH C G
Sbjct: 26 NPEDSSSPVEVSCSICLESVLDDGTRSKAKLQCGHQFHLDCIG 68
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 422 CGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSEPAFQLLTAEVYAEWVCDKCLSSK 478
CG C E + D+ +C C WFH C ++ PA AE ++ C C + +
Sbjct: 202 CGACG-ESYAADEFWICCDLCEMWFHGKCVKIT-PA----RAEHIKQYKCPSCSNKR 252
>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 704
Score = 29.9 bits (64), Expect = 4.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 420 YPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
+ C VC K++ ++ +C GC++ H C
Sbjct: 337 WSCSVCRKKIDNDYGGYVCTKGCSYAAHSKC 367
>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 711
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 414 PNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGCTGL 453
P P+ PC VC ++D + CN+ HR C L
Sbjct: 273 PRRIPL-PCDVCGLSLNDAHDPVYACLPCNYMVHRACINL 311
>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 403 PDQP-MVFNPQNPNAPPIYPCGVCH-KEVHDNDQAILCESGCNFWFHRGC 450
P QP + + P PP+ C C K + + C + CN FHRGC
Sbjct: 26 PAQPHKLCRRRQPTHPPLSICFTCKGKHLKRSKYYYYCAT-CNLEFHRGC 74
Score = 29.9 bits (64), Expect = 4.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 417 PPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
P + CG+C V N C+ GC + H C
Sbjct: 289 PGDFSCGLCRHTVDVNCGQYSCDKGCQYAIHSKC 322
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 29.5 bits (63), Expect = 5.2
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 399 KVYPPDQPMVFNPQNPNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGCTGLSE 455
K PPD + Q N ++ C VCH + ILC+ GC FH C GL +
Sbjct: 677 KAQPPDMLKMKLRQGEN--DVF-CSVCHY----GGKLILCD-GCPSAFHANCLGLED 725
>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 556
Score = 29.5 bits (63), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 417 PPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
P + CGVCHK +++ A C S C++ H C
Sbjct: 192 PEEWICGVCHKIINNQYGAYSC-SVCHYAVHSKC 224
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 29.5 bits (63), Expect = 5.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 9 PSYRLPGPGLGPPDFKPP-MDTPTPQASAPSNPKKRRKTS 47
P+Y+ P P + PP +PP PTP P+ + T+
Sbjct: 105 PTYKPPTPTVKPPSVQPPTYKPPTPTVKPPTTSPVKPPTT 144
>At5g05910.1 68418.m00653 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 151
Score = 29.5 bits (63), Expect = 5.2
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 422 CGVCHKEV----HDNDQAILCESGCNFWFHRGC 450
C +C +++ +D+D+ ++C S CN FH C
Sbjct: 92 CPICLEDLKKVDNDDDKVVVCLSKCNHSFHMNC 124
>At3g49260.2 68416.m05384 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 471
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 1 MSHNLAGMP-SYRLPGPGLGPPDFKPPMDTPTPQASA 36
+ H ++ P + R GPG GP + PP P P A+A
Sbjct: 288 LDHWMSSQPYTGRQTGPGPGPGQYNPPPYPPFPTAAA 324
>At3g49260.1 68416.m05383 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 471
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 1 MSHNLAGMP-SYRLPGPGLGPPDFKPPMDTPTPQASA 36
+ H ++ P + R GPG GP + PP P P A+A
Sbjct: 288 LDHWMSSQPYTGRQTGPGPGPGQYNPPPYPPFPTAAA 324
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 29.1 bits (62), Expect = 6.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 411 PQNPNAPPIYPCGVCHKEVHDNDQAILCESG-CNFWFHRGCTGLSE 455
P++P P I VC + + D I CE C+ W H GC L +
Sbjct: 103 PEDPFQPEIKVRCVCGNSL-ETDSMIQCEDPRCHVWQHVGCVILPD 147
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 29.1 bits (62), Expect = 6.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 411 PQNPNAPPIYPCGVCHKEVHDNDQAILCESG-CNFWFHRGCTGLSE 455
P++P P I VC + + D I CE C+ W H GC L +
Sbjct: 103 PEDPFQPEIKVRCVCGNSL-ETDSMIQCEDPRCHVWQHVGCVILPD 147
>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille
protein (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein
(ZWILLE protein) {Arabidopsis thaliana}; contains Pfam
profiles PF02171: Piwi domain, PF02170: PAZ domain
Length = 988
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 3 HNLAGMPSYRLPGPGLGPPDFKPPMDTPTPQASAPSNPKKRR 44
HN + + ++P P P P QAS+PS P K R
Sbjct: 24 HNPKTVQNGKIPPPSPSPVTVTTPATVTQSQASSPSPPSKNR 65
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 29.1 bits (62), Expect = 6.9
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 409 FNPQNPNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGCT----GLSE------PAF 458
F P A + C VCHK V+ + GC +H C G S+ P
Sbjct: 108 FLPFLVGAKKMVDCLVCHKPVYPGEDLSCSVRGCQGAYHSLCAKESLGFSKSSKFKCPQH 167
Query: 459 QLLTAEVYAEWVCDKC 474
+ + +W C KC
Sbjct: 168 ECFVCKQRTQWRCVKC 183
>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 551
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 420 YPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
+ CGVC KEV+ A C + C F H C
Sbjct: 191 WSCGVCRKEVNGMHGAFSCLT-CTFAVHSRC 220
>At5g13210.1 68418.m01516 expressed protein
Length = 673
Score = 28.7 bits (61), Expect = 9.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 14 PGPGLGPPDFKPPMD-TPTP-QASAPSNPKKRRKTSNASN 51
P P LGPP+ + P P P S PS+P SN +N
Sbjct: 3 PSPLLGPPELRDPNSLLPKPTTTSGPSDPFMDAMVSNFNN 42
>At5g07190.1 68418.m00819 embryo-specific protein 3, putative
similar to embryo-specific protein 3 GI:3335171 from
[Arabidopsis thaliana]
Length = 213
Score = 28.7 bits (61), Expect = 9.2
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 4 NLAGMPSYRLPGPGLGPPDFKP--PMDTPTPQASAPSNPKKRRKTSNASN 51
N G PS P L PP F P P +TPT P P + N +
Sbjct: 149 NTTGRPS----SPDLPPPHFPPEFPPETPTTPPPPPPRPSAASRLGNGES 194
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 28.7 bits (61), Expect = 9.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 420 YPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
+ CGVC ++V++N A C +++ H C
Sbjct: 306 WSCGVCRQKVNNNCGAYTCNKCRHYFVHTRC 336
>At3g28650.1 68416.m03576 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 665
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 414 PNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
P P + CGVC +E++ + A C S N+ H C
Sbjct: 300 PLGPGDWICGVCWEEINWSYGAYSCSSCPNYAIHSRC 336
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 420 YPCGVCHKEVHDNDQAILCESGCNFWF-HRGC 450
+ CGVC ++V +N A C CN +F H C
Sbjct: 308 WSCGVCRQKVDNNCGAYTCNK-CNHYFVHTRC 338
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 28.7 bits (61), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 419 IYPCGVCHKEVHDNDQAILCESGCNFWFHRGC 450
I+ CGVC KE+ + A +C + H C
Sbjct: 165 IWSCGVCRKEIDGDYGAYICNICSGYAVHTRC 196
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.134 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,891,395
Number of Sequences: 28952
Number of extensions: 228788
Number of successful extensions: 1452
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 162
length of query: 487
length of database: 12,070,560
effective HSP length: 84
effective length of query: 403
effective length of database: 9,638,592
effective search space: 3884352576
effective search space used: 3884352576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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