GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001467-TA|BGIBMGA001467-PA|IPR009036|Molybdenum cofactor
biosynthesis, IPR006285|E1-like protein-activating enzyme Gsa7p/Apg7p,
IPR000594|UBA/THIF-type NAD/FAD binding fold
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)             135   1e-31
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         52   1e-06
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   1e-06
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.081
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                  36   0.11 
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.43 
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   1.00 
SB_27391| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   1.00 
SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.3  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.7  
SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.7  
SB_21097| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.7  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.0  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.3  
SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)                   29   9.3  

>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score =  135 bits (327), Expect = 1e-31
 Identities = 84/205 (40%), Positives = 112/205 (54%), Gaps = 29/205 (14%)

Query: 219 DLVSTYFVFADPSN-GCNPGWPLRTFLAALLEYCPELAKSTLQVIGLRSSMNG---DFIK 274
           DL      FADP+    NPGWPLR FL  L  +        L+V+  R    G   +   
Sbjct: 455 DLFQLMVGFADPTTLPSNPGWPLRNFLLFLAFHWGTKIDD-LKVLCFRDRFRGGRREIDH 513

Query: 275 SLVFSIEIPQDIKPVESAGWVGWERNDKGNFGPRLANMSTSMDPVILADTSSDLNIKLMK 334
           S+V  + +P  I   E   ++GWE+N K   GPR  ++S +MDP  LA++S DLN+KLM+
Sbjct: 514 SIVLDVTLPV-INENECPKYIGWEKNKKQKLGPRSVDLSATMDPEKLAESSVDLNLKLMR 572

Query: 335 WRLVPDLNVGVMKDTKCLLLGAGTLGCHVARNLLAWGFRHITFVDNGKVSYSNPTRQVLF 394
           WRL+P+L++ V+  T+CLLLGAGTLGC+VAR L+                        LF
Sbjct: 573 WRLLPELDLDVVSSTRCLLLGAGTLGCNVARCLM-----------------------TLF 609

Query: 395 NYQDCLGGGRRKAEAAADNLKSILP 419
            + DC  GGR KA AAA+ LK I P
Sbjct: 610 EFDDCKEGGRPKAAAAAEALKRIFP 634



 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 448 DIKRITEAISEHDVVFLLLDTREARWLPTLIAAQHRKIVINAALGFDSYLVMRHGISTSS 507
           D+ R+ + I  HDV+FLL+DTRE+RWLPT++AA   K V+ A L FD        +S ++
Sbjct: 732 DVTRLEQLIESHDVIFLLMDTRESRWLPTVMAAARHKTVLPACLAFDKCTACSSKVSAAN 791

Query: 508 EEV 510
            ++
Sbjct: 792 HDL 794



 Score = 51.2 bits (117), Expect = 3e-06
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 13/114 (11%)

Query: 8   TEIIQYVPFSSFVHPSFWHTLTEMKLEVDKLKETTKQIFGRFT---YRCDIGSVFEVDGT 64
           + I+Q+ PFSS V   FWH L + KL+   L +  K + G +    Y   +    +    
Sbjct: 280 SRILQFAPFSSAVDAIFWHKLKDKKLDEYYLNDEPKPLQGYYVNCEYLWILLKQTKAKNG 339

Query: 65  SFNKTPHLE----------QQYHHVMGTIMNKNTIEDFKSIDKASLLNSIGEMI 108
           SF+   H++           +     G ++N NTI+ F+S+DK  L++S+GE I
Sbjct: 340 SFSFLTHIQWNVKKRNAVPLRAFKTHGQLVNTNTIDAFRSLDKKILMDSVGEKI 393


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 52.4 bits (120), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 346 MKDTKCLLLGAGTLGCHVARNLLAWGFRHITFVDNGKVSYSNPTRQVLFNYQDCLGGGRR 405
           + ++K L++GAG +GC + +NL+  GF++I  +D   +  SN  RQ LF+ Q     G+ 
Sbjct: 21  VNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHV---GKS 77

Query: 406 KAEAAADNLKSILPTTNSKGIVAHIPMPGHPI 437
           KA+ A ++     P      I  +I  P + I
Sbjct: 78  KAKVARESALRFNPDAKIVAIHDNITSPEYGI 109


>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 52.4 bits (120), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 346 MKDTKCLLLGAGTLGCHVARNLLAWGFRHITFVDNGKVSYSNPTRQVLFNYQDCLGGGRR 405
           + ++K L++GAG +GC + +NL+  GF++I  +D   +  SN  RQ LF+ Q     G+ 
Sbjct: 21  VNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHV---GKS 77

Query: 406 KAEAAADNLKSILPTTNSKGIVAHIPMPGHPI 437
           KA+ A ++     P      I  +I  P + I
Sbjct: 78  KAKVARESALRFNPDAKIVAIHDNITSPEYGI 109


>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 36.3 bits (80), Expect = 0.081
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 324 TSSDLNIKLMKWRLVPDLNVG---VMKDTKCLLLGAGTLGCHVARNLLAWGFRHITFVDN 380
           T+S+++ +  +  ++P++ V     +K +  L++GAG LGC  A  L A G   +  VD 
Sbjct: 53  TNSEIS-RYSRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAALYLAAAGIGCLGLVDY 111

Query: 381 GKVSYSNPTRQVL 393
             V  SN  RQVL
Sbjct: 112 DVVDTSNLHRQVL 124


>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score = 35.9 bits (79), Expect = 0.11
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 346 MKDTKCLLLGAGTLGCHVARNLLAWGFRHITFVDNGKVSYSNPTRQVLFNYQDCLGGGRR 405
           M  +  L+ G   LG  +A+N++  G + +T  D G V  S+ T Q   N +D    G+ 
Sbjct: 75  MAVSNVLISGLRGLGVEIAKNVVLGGVKSVTLHDTGAVELSDLTSQFFLNKKDV---GKN 131

Query: 406 KAEAA 410
           +AE +
Sbjct: 132 RAEVS 136



 Score = 29.5 bits (63), Expect = 9.3
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 350 KCLLLGAGTLGCHVARNLLAWGF-----RHITFVDNGKVSYSNPTRQVLFNYQD 398
           K  ++GAG +GC   +N    G       HI   D   +  SN  RQ LF   D
Sbjct: 344 KYFVVGAGAIGCEHLKNFAMMGLGSGEGGHIYTTDMDTIEKSNLNRQFLFRPAD 397


>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 33.9 bits (74), Expect = 0.43
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 346 MKDTKCLLLGAGTLGCHVARNLLAWGFRHITFVDNGKVSYSNPTRQVLFNYQDCLGGGRR 405
           M      L G G LG  +A+NL   G + IT  D    S ++   Q  F  +D +   R 
Sbjct: 27  MAHASVFLSGVGGLGVEIAKNLTLAGIKSITLHDTRAASMADLGSQ-FFLREDDVTSSRN 85

Query: 406 KAEAAADNLKSILP 419
           +A A+A  +  + P
Sbjct: 86  RAVASAGRVAELNP 99


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 32.7 bits (71), Expect = 1.00
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 145  AFPAPSQPTVHMKGRSTKISDYFNNKQLETLSQCYKSLEENQKNFFVVIKKN 196
            AF  PS   + +K  S  IS Y NN Q++ LS     L  N  N  VV K N
Sbjct: 1623 AFRDPSDQPIAIKNLSEPISIYLNNGQIDKLSSLNGELTLNSPN-MVVYKVN 1673


>SB_27391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 32.7 bits (71), Expect = 1.00
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 89  IEDFKSIDKASLLNSIGEMIWSNLRERTWITNPSALLN 126
           + DF SI KAS +  I +++  N+ ER+W   PS +LN
Sbjct: 149 LPDFASIVKASRIKLISQLL--NMEERSWKIIPSCILN 184


>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 190 FVVIKKNDDLSVKKLSEVFDVNSANCIDLDLVSTYFVFADPSNGCNPGW 238
           F V KK+D L   + +EV  V+    +DL    +   +A+P+NG + GW
Sbjct: 98  FTVTKKDDKLPFMEGAEVIVVDDYKPMDLTTDESSGSWANPTNGIDLGW 146


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 44   QIFGRF-TYRCD--IGSVFEVDGTSFNKTPHLEQQYHHVMGTIMNKNTIEDFKSIDKASL 100
            +++G +  Y C+  I  VF +DGTSF K     Q   +V  T+ + N   D   +   ++
Sbjct: 2863 EMYGPYCNYTCESSIDVVFALDGTSFTKPIEFYQTIQYVRATVNSLNVSSDGTHVG-VTV 2921

Query: 101  LNSIGEMI 108
               IGE I
Sbjct: 2922 YAKIGERI 2929


>SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 442 KEETIGDIKRITEAISEHDVVFLLLDTREARWLPTLIAAQHRKIVINAALGFDSYLVMRH 501
           KE+++  +KR    ++  D+  L+  +  A ++ T IA +    ++N A+  D   ++++
Sbjct: 60  KEDSLMSLKRAIIGLAVVDIGGLVFTSPAAEYIATSIAKRPELALVNKAIS-DYKHILKN 118

Query: 502 GISTSSEEVGTLDKQ 516
           G++T   +   L KQ
Sbjct: 119 GLATEVADADALIKQ 133


>SB_21097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 197 DDLSVKKLSEVFDVNSANCIDLDLVSTYFVFADPSNGCNPGWPL 240
           DDL  K+ S V  +   +C  + L S YF   + SN C+PG PL
Sbjct: 33  DDLRSKRFSCVSAMRGKSCEVIHLRSLYF--PETSNSCSPGDPL 74


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 435 HPIGDSLKEETIGDIKRITEAISEHDVVFLLLDTREARWLPTLIAAQHRKIVINAALGFD 494
           HP+  S+KEET+   +R    I EH      L      WL T    + ++I++       
Sbjct: 877 HPLFSSMKEETVWSFERAQAYIDEHHTKEKQL---PENWLFTTFTKRMQQIMLTCFHSVR 933

Query: 495 SYLVMRHG 502
             L  RHG
Sbjct: 934 KKLHRRHG 941


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 169 NKQLETLSQCYKSLEENQKNFFVVIKKNDDLSVKKLSEVFDVNSANCIDLDLVST 223
           +K ++  S  Y S+ E  ++ F+   +N    V KLS VFD      + LDL++T
Sbjct: 197 HKAMKDFSNTYPSIHELSRDNFIWNIRNAPRVVNKLSHVFDCG----VKLDLINT 247


>SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)
          Length = 155

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 182 LEENQKNFFVVIKKNDDLSVKKLSEVFDVNSANCIDLDLVSTYFVFADPSNGCNPGWPLR 241
           L E+ +    +++  D+LS+K+    F     NC      S  F     S+   PG P  
Sbjct: 24  LLESYEKLITIVQSGDELSLKECKSQFQNEKWNC------SVRFA----SSNRMPGLPRL 73

Query: 242 TFLAALLEYC-PELAKSTLQVIG-LRSSMNGDFIK 274
              AA   YC P+ +K +  V+G + SS N D++K
Sbjct: 74  APSAA--HYCHPDASKGSTGVLGRVCSSDNPDYLK 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,517,481
Number of Sequences: 59808
Number of extensions: 934113
Number of successful extensions: 1932
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1913
Number of HSP's gapped (non-prelim): 23
length of query: 681
length of database: 16,821,457
effective HSP length: 87
effective length of query: 594
effective length of database: 11,618,161
effective search space: 6901187634
effective search space used: 6901187634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)