GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001467-TA|BGIBMGA001467-PA|IPR009036|Molybdenum cofactor
biosynthesis, IPR006285|E1-like protein-activating enzyme Gsa7p/Apg7p,
IPR000594|UBA/THIF-type NAD/FAD binding fold
         (681 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.88 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   3.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   4.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 362 HVARNLLAWGFRHITFVDNGKVSYSNPTRQVLFNYQDCLGGGRRKAEA 409
           H+ R LL W    +  V   +V+     R+    YQD L  G R +E+
Sbjct: 15  HIRRELLRWTKNMVFVVGLERVAEELMGRRRWKQYQDTLYSGTRSSES 62


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 384 SYSNPTRQVLFNYQDCLGGGRRKAEAAADNLKSILPTTNSKG 425
           ++ N   ++L + +D  GG  +K+    +NLK+++  + SKG
Sbjct: 197 TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV-VSGSKG 237


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 475  PTLIAAQHRKIVINAAL-GFDSYLVMRHGISTSSEEVGTLDKQYIEG 520
            P L+  Q  ++ ++  + GF++ LV+  GI++S  + G+ +  +  G
Sbjct: 1037 PLLVNDQLGQLYLDLEVEGFETKLVLEDGITSSGSDSGSSNGSWTAG 1083


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 365 RNLLAWGFRHITFVD-NGKVSYS 386
           +N+L W F+  TF+  NGK  +S
Sbjct: 111 KNVLLWDFQECTFISVNGKEVHS 133


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 342 NVGVMKDTKCLLLGAGTLGCHVARN 366
           N G +  TK  L+ AG   CH  RN
Sbjct: 363 NDGSLYLTKVQLIHAGNYTCHAVRN 387


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,494
Number of Sequences: 429
Number of extensions: 8628
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 681
length of database: 140,377
effective HSP length: 62
effective length of query: 619
effective length of database: 113,779
effective search space: 70429201
effective search space used: 70429201
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)