GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001465-TA|BGIBMGA001465-PA|undefined
         (181 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    25   0.36 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   1.9  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   3.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   4.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   4.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   4.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.8  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
          protein 5 protein.
          Length = 144

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 27 KTRHNPTAHKKLLLNFNGIPLVNVISELQLVFNDVNC 63
          KT H  T   K    ++ + +  ++   +L+ N +NC
Sbjct: 23 KTLHRSTRDDKYTTRYDNVDVDRILHSKRLLLNYINC 59


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
          protein 20 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 53 ELQLVFNDV---NCQKCTDCMERAVKAFIINQHIISSR 87
          EL+ V  D    +C KCTD  ++  K  I  QH+  ++
Sbjct: 61 ELKRVLPDALKTSCAKCTDKQKQGAKTVI--QHLYKNK 96


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 14  FKPDWEPKLNHSIKTRHNPTAHKKL 38
           F P  E KL H  +++ NP    KL
Sbjct: 103 FNPHHEIKLQHLHQSKFNPHEEVKL 127


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 5   AGGGKGRLLFKPDWEPKLNHSIKTRH 30
           AG   G   F P  EPK   +  TRH
Sbjct: 220 AGASNGT--FAPGMEPKRQRTAYTRH 243


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 5   AGGGKGRLLFKPDWEPKLNHSIKTRH 30
           AG   G   F P  EPK   +  TRH
Sbjct: 220 AGASNGT--FAPGMEPKRQRTAYTRH 243


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 5   AGGGKGRLLFKPDWEPKLNHSIKTRH 30
           AG   G   F P  EPK   +  TRH
Sbjct: 220 AGASNGT--FAPGMEPKRQRTAYTRH 243


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 5   AGGGKGRLLFKP 16
           +GGGKG+ + KP
Sbjct: 113 SGGGKGKKMRKP 124


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,301
Number of Sequences: 317
Number of extensions: 1490
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 181
length of database: 114,650
effective HSP length: 53
effective length of query: 128
effective length of database: 97,849
effective search space: 12524672
effective search space used: 12524672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)