GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001465-TA|BGIBMGA001465-PA|undefined
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    31   0.100
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   2.1  
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    25   5.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   5.0  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   5.0  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   6.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   6.6  

>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 31.1 bits (67), Expect = 0.100
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 137 TVTKYDVDREVYALKVHE-TIHLKEKANNTITSCHVYGVKKSFPFG 181
           TV  Y  DR  +  +     IHLK+ +   ITS H YG KK    G
Sbjct: 689 TVIDYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTG 734


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 26  IKTRHNPTAHKKLLLNFNGIPLVNVISELQLVFNDVN 62
           + T HNP+  + L    N IP +++ +    VFND+N
Sbjct: 205 VVTSHNPSPFESLRSLINSIPYLSLPA---FVFNDIN 238


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 42  FNGIPLVNVISELQLVFNDVNCQKCTDCMERAVKAFII 79
           F G  +  + S+L+L+F  V+C K       ++++F++
Sbjct: 166 FRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVV 203


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 145 REVYALKVHETIHLKEKANNTITSCHVYGVK 175
           RE + L VH T+    K N+T+++   Y ++
Sbjct: 69  REAWLLNVHPTVIESTKGNSTLSAVDFYFIQ 99


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 79  INQHIISSRPNLEDFQNDVLYEKLNINRNKRDANKKVD 116
           ++QHI      L+ F      EKL + R  ++A KK++
Sbjct: 458 LDQHIRLKSQELDAFAQATYREKLYMKRECQNARKKIE 495


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 32  PTAHKKLLLNFNGIPLVNVISEL 54
           P    ++ LNF+GIP+ +++++L
Sbjct: 463 PAVWSRISLNFDGIPVNDIVAKL 485


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 83  IISSRPNLEDFQNDVLYEKLNINRNKRDANKKVDAPNE 120
           +IS   + E  +ND +  ++N  +  R++ KK+   NE
Sbjct: 41  LISKSKDYESIKNDRIVTEVNYEQQLRNSEKKLLQSNE 78


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 811,468
Number of Sequences: 5004
Number of extensions: 29646
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 7
length of query: 181
length of database: 2,362,478
effective HSP length: 69
effective length of query: 112
effective length of database: 2,017,202
effective search space: 225926624
effective search space used: 225926624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)