GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001465-TA|BGIBMGA001465-PA|undefined
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    29   2.9  
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901...    27   6.6  

>01_01_0762 +
           5889925-5890136,5891110-5891273,5891755-5891878,
           5891941-5892073,5892629-5892732,5892867-5895780,
           5895876-5895965,5896251-5896355,5896633-5896740,
           5896826-5896876
          Length = 1334

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 51  ISELQLVFNDVNCQKCT-DCMERAVKAFIINQHIISSRPNLE 91
           I E  +V  + N +  + DC E    A   +QHIIS +P  E
Sbjct: 607 IKESSIVSQNTNAENVSGDCSEGTACAISYSQHIISDKPTNE 648


>11_06_0723 -
           26688378-26688385,26689351-26689569,26690100-26690106,
           26690194-26690256,26690329-26690400,26690507-26691681,
           26692024-26692626,26692643-26692781
          Length = 761

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 50  VISELQLVFNDVNCQKCTDCMERAVKAFIINQHIISSRPNLEDFQNDVLYEKLNINRNKR 109
           V+SEL ++FN  +C    +C     +  I+ +HI+S  P L D +   +  K  + R ++
Sbjct: 425 VVSELLVLFNQEDCDLHCECRHFEFRG-ILCRHILSILP-LVDIEK--VPSKYILQRWRK 480

Query: 110 DANKK 114
           D  +K
Sbjct: 481 DFKRK 485


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,836,825
Number of Sequences: 37544
Number of extensions: 165764
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 2
length of query: 181
length of database: 14,793,348
effective HSP length: 78
effective length of query: 103
effective length of database: 11,864,916
effective search space: 1222086348
effective search space used: 1222086348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)