GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001465-TA|BGIBMGA001465-PA|undefined
         (181 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  

>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 24  HSIKTRHNPTAHKKLLLNFNG--IPLVNVISELQLVFNDVN---CQKCTDCMERAVKAF- 77
           H +KTR   TA+ +LL ++ G  + ++  +S++Q    DV     +   D  +   K F 
Sbjct: 778 HDLKTRPGETAYVRLLKDWRGSDVDILQEVSKVQSSVQDVGQHVAKGFKDVGQNVAKGFK 837

Query: 78  IINQHIISSRPNLEDFQNDV 97
            + Q + S    ++D   +V
Sbjct: 838 DVGQQVQSVDKKVQDIDQNV 857


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,784,296
Number of Sequences: 59808
Number of extensions: 202833
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 2
length of query: 181
length of database: 16,821,457
effective HSP length: 78
effective length of query: 103
effective length of database: 12,156,433
effective search space: 1252112599
effective search space used: 1252112599
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)