GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001465-TA|BGIBMGA001465-PA|undefined
         (181 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    29   1.9  
U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell ...    29   1.9  
AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.    29   1.9  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 49  NVISELQLVFNDVNCQKCTDCMERAVKAFIINQHIISSRPNLEDFQNDVLYEKLNINRNK 108
           N++  + ++ +D    KC DC    +K+ +I+ H    R N ED  +D+  +++    N 
Sbjct: 354 NLLRHVIMIHSDCKPYKCWDCDFTGIKSNVIS-HARQCRHNAED-AHDITTDEMRAEWNL 411

Query: 109 R 109
           R
Sbjct: 412 R 412


>U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell
           lineage protein 26 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 49  NVISELQLVFNDVNCQKCTDCMERAVKAFIINQHIISSRPNLEDFQNDVLYEKLNINRNK 108
           N++  + ++ +D    KC DC    +K+ +I+ H    R N ED  +D+  +++    N 
Sbjct: 320 NLLRHVIMIHSDCKPYKCWDCDFTGIKSNVIS-HARQCRHNAED-AHDITTDEMRAEWNL 377

Query: 109 R 109
           R
Sbjct: 378 R 378


>AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 49  NVISELQLVFNDVNCQKCTDCMERAVKAFIINQHIISSRPNLEDFQNDVLYEKLNINRNK 108
           N++  + ++ +D    KC DC    +K+ +I+ H    R N ED  +D+  +++    N 
Sbjct: 320 NLLRHVIMIHSDCKPYKCWDCDFTGIKSNVIS-HARQCRHNAED-AHDITTDEMRAEWNL 377

Query: 109 R 109
           R
Sbjct: 378 R 378


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 19  EPKLNHSIKTRHNPTAHKKLLLNFNGIPLVNVISELQLVFNDVNCQKCTDCMERAVKAFI 78
           EP ++    T   P  +  L     G PL            +    KCT C +R   +  
Sbjct: 229 EPSVSSGTPTTGTPAPNTPLA---QGSPLPGAAPTFGNPATNTTSYKCTYCSKRYKTSSG 285

Query: 79  INQHIISSRPNLEDFQN 95
           ++ H++SS   + D Q+
Sbjct: 286 LSNHMMSSHQKISDVQD 302


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 137 TVTKYDVDREVYALKVHETIHLKEKA----NNTI-TSCHVYGVKKSF 178
           T T Y + R+V+ L+ H  I L + A    +NT+ T C +  + KSF
Sbjct: 378 TETHYHMMRQVFDLQKHRGIRLTQNAIDSISNTLETKCLIADMDKSF 424


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,335,731
Number of Sequences: 27539
Number of extensions: 158548
Number of successful extensions: 362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 5
length of query: 181
length of database: 12,573,161
effective HSP length: 77
effective length of query: 104
effective length of database: 10,452,658
effective search space: 1087076432
effective search space used: 1087076432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)