GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001465-TA|BGIBMGA001465-PA|undefined
         (181 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    26   0.25 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    26   0.25 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    26   0.25 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.00 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.3  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 52  SELQLVFNDV---NCQKCTDCMERAVKAFIINQHIISSRPNLED 92
           +EL+ V  D    +C+KCTD     +K  I  + ++ ++P L D
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKVI--KFLVENKPELWD 103


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 52  SELQLVFNDV---NCQKCTDCMERAVKAFIINQHIISSRPNLED 92
           +EL+ V  D    +C+KCTD     +K  I  + ++ ++P L D
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKVI--KFLVENKPELWD 103


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 52  SELQLVFNDV---NCQKCTDCMERAVKAFIINQHIISSRPNLED 92
           +EL+ V  D    +C+KCTD     +K  I  + ++ ++P L D
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKVI--KFLVENKPELWD 103


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 148 YALKVHETIHLKEKANNTITSCH-VYGVKKS 177
           + LK+H+  H  EK     T CH  +G KK+
Sbjct: 245 HVLKLHQVAHYGEKVYK-CTLCHETFGSKKT 274


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 14  FKPDWEPKLNHSIKTRHNPTAH 35
           +K  WEPK    +K  H P+ H
Sbjct: 88  YKLRWEPKEYGGVKMLHVPSDH 109


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 14  FKPDWEPKLNHSIKTRHNPTAH 35
           +K  WEPK    +K  H P+ H
Sbjct: 88  YKLRWEPKEYGGVKMLHVPSDH 109


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 83  IISSRPNLEDFQNDVLYEKLNINRNKRDANKKV 115
           IISS  N     N+  Y   N N N  + NKK+
Sbjct: 80  IISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKL 112


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 83  IISSRPNLEDFQNDVLYEKLNINRNKRDANKKV 115
           IISS  N     N+  Y   N N N  + NKK+
Sbjct: 80  IISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKL 112


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 147 VYALKVHETIHLKEKANNTITSCHVYGV 174
           +Y   V+ T  +K++AN    S   Y V
Sbjct: 534 IYGFNVNATKQIKDEANKKGVSLRFYNV 561


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 14  FKPDWEPKLNHSIKTRHNPTAH 35
           +K  W+PK    ++  H P+ H
Sbjct: 84  YKLKWDPKEYGGVEMLHVPSDH 105


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 73  AVKAFIINQHIISSRPNLEDFQNDVLYEKLNINRNKRDANKKVDA-PNE 120
           A+K F  ++HI+   P L     + + E   +N N  D  + V + P E
Sbjct: 883 ALKFFPFDKHILDKLPTLISNYIEAVKEGKFMNVNMLDTYESVHSFPTE 931



 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 15   KPDWEPKLNHSIKTRHNPTAHKKLLLNFNG 44
            K D +PK++ ++  R+     K   ++ NG
Sbjct: 1260 KMDQKPKMDFNVDIRYGKNCGKGERIDMNG 1289


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 19  EPKLNHSIKTRHNPTAHKKLLLNFNGIPLVNV 50
           +PK  +  +  ++ T+H+ L  +  G   VNV
Sbjct: 110 DPKNQYKNQNNNHYTSHQHLRTHLRGTLTVNV 141


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,722
Number of Sequences: 429
Number of extensions: 2019
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 181
length of database: 140,377
effective HSP length: 54
effective length of query: 127
effective length of database: 117,211
effective search space: 14885797
effective search space used: 14885797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)