GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001465-TA|BGIBMGA001465-PA|undefined
         (181 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family pr...    27   7.4  
At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family pr...    27   7.4  
At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family pr...    27   7.4  

>At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family
           protein
          Length = 253

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 84  ISSRPNLEDFQNDVLYEKLNINRNKRDANKKVD 116
           +SS  N  D  N V+ +KLN N ++RD  KK++
Sbjct: 57  VSSEGNEID-NNPVVVKKLNHNASERDRRKKIN 88


>At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 241

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 84  ISSRPNLEDFQNDVLYEKLNINRNKRDANKKVD 116
           +SS  N     N V+ +KLN N ++R+  KK++
Sbjct: 46  VSSENNRTLLDNPVVMKKLNHNASERERRKKIN 78


>At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 242

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 84  ISSRPNLEDFQNDVLYEKLNINRNKRDANKKVD 116
           +SS  N     N V+ +KLN N ++R+  KK++
Sbjct: 46  VSSENNRTLLDNPVVMKKLNHNASERERRKKIN 78


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,045,190
Number of Sequences: 28952
Number of extensions: 142760
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 3
length of query: 181
length of database: 12,070,560
effective HSP length: 77
effective length of query: 104
effective length of database: 9,841,256
effective search space: 1023490624
effective search space used: 1023490624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)