Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001464-TA|BGIBMGA001464-PA|IPR001708|60 kDa inner
membrane insertion protein
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 145 1e-35
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 134 2e-32
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|... 50 6e-07
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 29 0.87
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr... 28 2.0
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 28 2.0
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 27 4.6
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 8.1
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 145 bits (351), Expect = 1e-35
Identities = 91/301 (30%), Positives = 141/301 (46%), Gaps = 5/301 (1%)
Query: 99 PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQ 158
P ++QN LH+ +PWW +I + +R+ +FP+++ + SA++ P++
Sbjct: 96 PHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAIINPKVAEHM 155
Query: 159 MKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANC 218
+++A+ GN + ++ K +NPL L P+ Q LFISFF L+ MA
Sbjct: 156 SVLSKAKAEGNSELMMQATTQIQNLYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGV 215
Query: 219 PVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRA 278
PVE T GG WW DL+ PD + PV M IELG + G M+ R
Sbjct: 216 PVEGFTDGGFWWVNDLSQPDPLHIFPVANGLLMLLNIELGSETGSNKVAMSPSMKKFFRF 275
Query: 279 IPLVMIPFTINFPGAILVYWCSSNFISLMQVGFLKIPAVREYFKIPKLIKHSADALP-IK 337
+ L FT+NFP AI +YW SN S+ Q FL+ +R +P++ SA +P +
Sbjct: 276 LCLASPLFTMNFPMAIFMYWFPSNVFSVFQGAFLRSSTIRHKLGLPEV--PSAMPVPNAQ 333
Query: 338 KKGFVEGAKDSWTNMKLSKELAERQRI-DEMIFTKAGKGPLQK-TYKYDPTKLTNIQAKS 395
+ FV+ D ++ + + I D F K QK T TK T + S
Sbjct: 334 NESFVKSFTDIVHGVQEKGKYPQASEILDATRFLKTDTNNEQKPTNNSTITKATTLSDNS 393
Query: 396 K 396
+
Sbjct: 394 Q 394
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 134 bits (325), Expect = 2e-32
Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 11/276 (3%)
Query: 97 WGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQL 156
W P L+QN ++V PWW +I+L T+ VR+ + P++I S RNS +++ PE++
Sbjct: 65 WWPYALIQNTAYTINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKK 124
Query: 157 LQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMA 216
+ A+ +Q+ +++ + + +NP I+PL Q+ +F SFF +R M+
Sbjct: 125 ELEAIKTAKLDNDQLALNQHSIALRGIYLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMS 184
Query: 217 NCPVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVL 276
V+ T GGL WF DL++PD Y +LP+I + M++ +++ N R
Sbjct: 185 RLSVDGFTTGGLAWFKDLSIPDPYCILPIINAGLMFSGMQMNRANTASTIGNSTNWRTFF 244
Query: 277 RAIPLVMIPFTINFPGAILVYWCSSNFISLMQVGFLKIPAVRE---YFKIPKLIKHSADA 333
L+ T P AI +YW S+ +++Q LK P VR + +P +I+
Sbjct: 245 FLCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGFAPLPSIIEKQPSG 304
Query: 334 L-----PIKK-KGFVEGAKDSWTNM--KLSKELAER 361
PIK K F +G +D + +L K+++ R
Sbjct: 305 FTLITNPIKSLKEFYKGVRDGFKTQYEQLQKDVSRR 340
>SPCC1442.15c |cox18||mitochondrial inner membrane protein
Cox18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 202
Score = 50.0 bits (114), Expect = 6e-07
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 185 KEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLP 244
K +PL +P+ Q PLF LR + ESM+ G+ WF DLT+PD + +LP
Sbjct: 73 KRFNCHPLMIYALPITQLPLFAFASYQLRQAVDVCPESMSTEGMLWFTDLTLPDPHGVLP 132
Query: 245 VITSATMWATIELGVDGGRLDAQNMQVMRY--VLRAIPLVMIPFTINFPGAILVYWCSSN 302
+ + T + + D++ +++ ++ A + + F + A+ +YW +S
Sbjct: 133 AVLAVTY--LTNMSILKRPSDSRLLKIFNTAGIMSAFFVSFMAFKTS--TALSLYWTTSA 188
Query: 303 FISLMQ 308
SL+Q
Sbjct: 189 IYSLVQ 194
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 29.5 bits (63), Expect = 0.87
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 153 EIQLLQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQT-PLFISFFMG 211
+I+ L +T T E+A++ + F E G+ P + PL + F FF
Sbjct: 183 QIEKLNTDLTAEMITSRSWESAKF--KSYNFAAE-GIPPAGGCLHPLMKVREEFRKFFFE 239
Query: 212 LRGMANCPVESMTHGGLWWFVDLTVPDQY 240
L G P + G W F L VP Q+
Sbjct: 240 L-GFEEMPTNNFVESGFWNFDALFVPQQH 267
>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 28.3 bits (60), Expect = 2.0
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 279 IPLVMIPFTINFPGAILVYWCSSNF------ISLMQVGFLKIPAVREYFKIPKLIK--HS 330
IP ++IP N PG L Y NF I L +V ++ ++E K+ K +K +
Sbjct: 133 IPFILIPLIPNIPGFYLCYRAYCNFRAIQGSIQLARVMSIENIQMQESEKLEKALKLFTN 192
Query: 331 ADALPI 336
DA P+
Sbjct: 193 GDATPL 198
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 331 ADALPIKKKGFVEGAKDSWTNMKLSKELAERQRIDEMIFTKAGKGPL 377
AD++P+KKKG +G T + K +RQ+ E + KA + P+
Sbjct: 41 ADSIPVKKKGSAKGPPSFVTPEYIEK---QRQKKLEKMAKKAARKPI 84
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 27.1 bits (57), Expect = 4.6
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 285 PFTINFPGAILVYWCSSNFISLMQVGFLKIPAVREY 320
P T++ +++YW +S F + ++++P +Y
Sbjct: 13 PVTVSLVSPVIIYWVASAFFGFLH--YIELPVFEKY 46
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 8.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 220 VESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAI 279
V + G +W V + +P L ++ SAT+ T E GR +N+ V+ + R +
Sbjct: 398 VNDLERGVVWEEVIIMLPPHVTL--ILLSATVPNTKEFASWVGRTKKKNIYVISTLKRPV 455
Query: 280 PL 281
PL
Sbjct: 456 PL 457
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,373
Number of Sequences: 5004
Number of extensions: 61459
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 8
length of query: 396
length of database: 2,362,478
effective HSP length: 74
effective length of query: 322
effective length of database: 1,992,182
effective search space: 641482604
effective search space used: 641482604
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)
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