Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001464-TA|BGIBMGA001464-PA|IPR001708|60 kDa inner
membrane insertion protein
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490... 142 4e-34
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 136 4e-32
01_01_0348 + 2769295-2769660,2770082-2770192,2770284-2770358,277... 50 3e-06
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 44 2e-04
03_06_0651 + 35297560-35297895,35298881-35298991,35299670-352997... 43 5e-04
09_02_0094 + 4196729-4197571 31 2.1
>10_08_0659 +
19647037-19647464,19647569-19647659,19648998-19649039,
19649179-19649237,19649559-19649634,19649735-19649866,
19650251-19650358,19651040-19651094,19651187-19651437
Length = 413
Score = 142 bits (344), Expect = 4e-34
Identities = 81/263 (30%), Positives = 136/263 (51%), Gaps = 5/263 (1%)
Query: 71 ISDAVSAVQSFAANGEPTFASIGLGGWGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVR 130
++DA +A ++ A A+ + PV +Q+ +Y+H + WW I L T+++R
Sbjct: 96 LADAAAAAEAVPAPFPGEVAAAAADSFFPVAALQHVIDYIHTFTGLNWWACIALATVLIR 155
Query: 131 VVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLN 190
PL++ + + ++N PE++ ++ +M A + E A+ LF K G++
Sbjct: 156 SATVPLLVNQLKATQKLNAIRPEMEAIKEEMN-AMDPKSAKEGK--AKMTALFQKH-GVS 211
Query: 191 PLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLPVITSAT 250
P L L Q P+F+SFF +R M + V SM GG WF DLT PD ++LPV+T+
Sbjct: 212 PFTPLKGLLIQGPIFMSFFFAIRNMID-KVPSMKGGGSLWFTDLTTPDPLYILPVLTALI 270
Query: 251 MWATIELGVDGGRLDAQNMQVMRYVLRAIPLVMIPFTINFPGAILVYWCSSNFISLMQVG 310
T+EL + G + M+ R + ++ +PFT++F I YW +SN +L
Sbjct: 271 FLVTVELNLQEGMEGNPMARKMKNFSRGMAVLTVPFTMSFAKGIFCYWITSNLFTLTYGF 330
Query: 311 FLKIPAVREYFKIPKLIKHSADA 333
++ PAVR++ +P L SA A
Sbjct: 331 VIRRPAVRKFCNLPALEAQSASA 353
>03_01_0111 +
884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 136 bits (328), Expect = 4e-32
Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 19/280 (6%)
Query: 71 ISDAVSAVQSFAANGEP-TFASIGLGGWGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVV 129
++DA ++V A P A+ + PV +Q+ + +H + WW I L ++++
Sbjct: 109 LADAAASVPVSAPAPFPGEVAAAAADSFAPVAALQHLIDGVHSLTGLNWWACIALTSLLI 168
Query: 130 RVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQE--------MM 181
R + PL +L+Q + M + I L ++ R GN+ + R E M
Sbjct: 169 RTLTVPL-LLNQMKATAMRPEIEAINLEMRTISSTRIAGNEKSSTRVTDEGSMSTDPQSM 227
Query: 182 LFMKEK--------GLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVD 233
L K K G+ PL L Q P+F+SFF + M V S GG++WF D
Sbjct: 228 LEGKRKLGELFLRHGVTPLTPLKGLFIQAPIFMSFFFAISNMVE-KVPSFKGGGIYWFTD 286
Query: 234 LTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIPLVMIPFTINFPGA 293
LT PD+ +LP++TS T T+EL + G ++ M+ R + ++ IPFT++FP A
Sbjct: 287 LTTPDELLILPMLTSLTFLVTVELNMQDGMEGNPMLKTMKNFSRVMAVLTIPFTMSFPKA 346
Query: 294 ILVYWCSSNFISLMQVGFLKIPAVREYFKIPKLIKHSADA 333
I YW +SN SL L+ PAVR + +P + A A
Sbjct: 347 IFFYWVTSNLFSLGYGFVLRKPAVRSFLDLPPIETQFAPA 386
>01_01_0348 +
2769295-2769660,2770082-2770192,2770284-2770358,
2770566-2770626,2770853-2770926,2771004-2771108,
2771475-2771582,2771681-2771784,2771939-2772088,
2772163-2772286,2772746-2772925
Length = 485
Score = 50.0 bits (114), Expect = 3e-06
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 121 AIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQEM 180
AI+L T++V+ PL ++ M N P+I+ +Q R GNQ R E
Sbjct: 140 AIILLTVIVKAATLPLTKQQVESTLAMQNLQPQIKAIQQ-----RYAGNQ---ERIQLET 191
Query: 181 MLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVP 237
K+ G+NPL LA P++I + L +AN E + G +W L P
Sbjct: 192 ARLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVAN---EGLLTEGFFWIPSLGGP 245
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 44.4 bits (100), Expect = 2e-04
Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 41/290 (14%)
Query: 72 SDAVSAVQSFAANGEPT-FASIGLGGWGPVGLVQNCFEYL---HVTLDVPWWGAIVLGTI 127
+D V + AA+ + A+ G GG V + + L H +PWW I L T+
Sbjct: 107 ADFGEVVATSAASADAAGVAAAGDGGSASGFAVSSLIDILDGFHNLTGIPWWITISLSTV 166
Query: 128 VVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQEMMLFMKEK 187
+R+++ P++I + +A++ LPE+ R +Q + Y ++ +E
Sbjct: 167 AMRLLILPVLITQIKKAAKIGKLLPELPPPFPPPLSGRSFRDQF--SLYQKK----RREL 220
Query: 188 GL-NPLKNLIVPLAQTPLFISFFMGLR--------GMAN-C---PVESMTHGGLWWFVDL 234
G + L N Q P FI + +R G+ N C P E + GG+ WF +L
Sbjct: 221 GCPSFLWNWAYFSIQFPCFILWMSTIRTMCLSNHPGLDNVCTRKPCE-QSMGGILWFHNL 279
Query: 235 T-VP--DQYFLLPVITSATMWATIELGVDGGRLD---------AQNMQVMRYVLRAIPLV 282
T P + P + + + I++ G A+ +V +L IPL
Sbjct: 280 TEFPHGSSGLVFPTLVAGLHYLNIQIAFHGTHTKHYPGIFGVLAKYYRVYLEIL-TIPLF 338
Query: 283 MIPFT---INFPGAILVYWCSSNFISLMQVGFLKIPAVREYFKIPKLIKH 329
+I + I G+ LVYW ++ I++ Q LK AV++ +P H
Sbjct: 339 LIGYVIPQITIQGS-LVYWTTNGLITVAQQLSLKNDAVKKVLGLPDTRAH 387
>03_06_0651 +
35297560-35297895,35298881-35298991,35299670-35299744,
35300165-35300225,35300406-35300479,35300564-35300668,
35301099-35301206,35301604-35301707,35302005-35302223,
35302505-35302646,35302694-35302825,35302962-35303066
Length = 523
Score = 42.7 bits (96), Expect = 5e-04
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 110 LHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGN 169
LHV P+ AI+L T++V+ FPL ++ M + P Q+K Q R G+
Sbjct: 121 LHVPY--PYGFAIILLTVLVKAATFPLTKKQVESAIAMRSLQP-----QVKAIQERYAGD 173
Query: 170 QIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLW 229
Q R E K ++PL + L P++I + L +AN E + G +
Sbjct: 174 Q---ERIQLETARLYKLSDVDPLAGCLPTLVTIPVWIGLYRALSNVAN---EGLLTEGFF 227
Query: 230 WFVDLTVP 237
W L P
Sbjct: 228 WIPSLAGP 235
>09_02_0094 + 4196729-4197571
Length = 280
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 244 PVITSATMWATIELGVDGGRLD-AQNMQVMRYVLRAIPLVMIPFTINFPGAILVYWC 299
P++T +G GG LD + + R + +PL ++P T+ G ++Y C
Sbjct: 54 PLLTQNPQHLVPFVGAQGGNLDYLETLPSPRLLTTHLPLSLLPSTVTTMGCHIIYLC 110
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,167,432
Number of Sequences: 37544
Number of extensions: 392144
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 9
length of query: 396
length of database: 14,793,348
effective HSP length: 84
effective length of query: 312
effective length of database: 11,639,652
effective search space: 3631571424
effective search space used: 3631571424
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)
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