Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001464-TA|BGIBMGA001464-PA|IPR001708|60 kDa inner
membrane insertion protein
(396 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36969| Best HMM Match : No HMM Matches (HMM E-Value=.) 267 1e-71
SB_26079| Best HMM Match : DUF1534 (HMM E-Value=2.5) 41 0.002
SB_42154| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_30955| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.1
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_24919| Best HMM Match : GSPII_F (HMM E-Value=2.4e-40) 29 6.6
SB_16409| Best HMM Match : DUF948 (HMM E-Value=0.57) 29 8.7
SB_46406| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18) 29 8.7
>SB_36969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 267 bits (654), Expect = 1e-71
Identities = 141/333 (42%), Positives = 194/333 (58%), Gaps = 5/333 (1%)
Query: 54 PLADSIXXXXXXXXXTTISDAVSAVQSFA-ANGEPTFASIGLGGWGPVGLVQNCFEYLHV 112
PLA++ +T D V V A GEPT AS+GLGG P+GLVQ+ E LH
Sbjct: 163 PLAENPFVTNPTEAGSTSIDIVQGVAGVVNAIGEPTLASMGLGGTTPIGLVQHALEMLHA 222
Query: 113 TLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIE 172
T+ +PW +IV TI R +MFPL++ SQ N+A++NN PE++ +Q ++ + N I
Sbjct: 223 TVGLPWVWSIVAATIAFRTLMFPLIVKSQANAARLNNVKPELEEVQAQLRDLMNSNNAIG 282
Query: 173 AARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFV 232
A + + K+ +P+K++I PL Q PLFISFF+GLR MAN PVES GGL+WF
Sbjct: 283 KAAASARLQQLYKDNDCHPIKSIIAPLVQVPLFISFFVGLRRMANLPVESFKEGGLFWFT 342
Query: 233 DLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIPLVMIPFTINFPG 292
DLT D YF+LP++ S TM A+IELG + G + Q MQ M+ R + + MIP T FP
Sbjct: 343 DLTAYDPYFVLPIVCSLTMLASIELGGEAGVSNPQ-MQHMKTFFRVMCVAMIPLTAQFPA 401
Query: 293 AILVYWCSSNFISLMQVGFLKIPAVREYFKIPKLIKHSADALPIKKKGFVEGAKDSWTNM 352
AI YW +SN SL QV LK+ AVREYF IP++ H LP + GF E + N
Sbjct: 402 AIFTYWVTSNLFSLGQVSLLKVKAVREYFGIPEMKVHK--NLP-AQGGFWENMSAGYKNA 458
Query: 353 KLSKELAERQRIDEMIFTKAGKGPLQKTYKYDP 385
K + +++ G PL+ TY+++P
Sbjct: 459 KEEAYVKHHEKMKRQKEKALGTAPLETTYEHNP 491
>SB_26079| Best HMM Match : DUF1534 (HMM E-Value=2.5)
Length = 165
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 99 PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRV-VMFPLVILSQRNSAQMNNNLPEIQLL 157
P+ Q E +H +PWW I+ T+V+R + PL I + A++ P +Q+
Sbjct: 44 PIYATQQVLEAIHTWTHLPWWATIIGVTVVLRTCITLPLAICQNKLVAKLELLQPTLQM- 102
Query: 158 QMKMTQARQTGNQIEAARYAQEMMLFMK 185
MT+A + +E R + + F K
Sbjct: 103 ---MTEALKHREAVECKRAGKTVEEFEK 127
>SB_42154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 209 FMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELG 258
F G G + C V ++ G ++W L +P LLP A M A IE G
Sbjct: 180 FNGGNGSSACSVIALVIGHIFWSKSLLLPRPSALLPESNVAAMCAGIEQG 229
>SB_30955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 971
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 209 FMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELG 258
F G G + C V ++ G ++W L +P LLP A M IE G
Sbjct: 786 FNGRNGSSACSVIALVIGHIFWSKSLLLPRPSALLPESNVAAMCVGIEQG 835
>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 29.5 bits (63), Expect = 5.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 40 RFASTLGSDAGKTLPLADSIXXXXXXXXXTTISDAVSAVQSFAAN-GEPTFA 90
+FA + G+ A KTL ADS+ +S +QS AA P+ A
Sbjct: 342 KFAGSSGTTARKTLQWADSVDQAAITKVMNQMSSVEQEIQSLAAKLSHPSIA 393
>SB_24919| Best HMM Match : GSPII_F (HMM E-Value=2.4e-40)
Length = 328
Score = 29.1 bits (62), Expect = 6.6
Identities = 15/90 (16%), Positives = 37/90 (41%)
Query: 10 RRSAVMKLFCEKVEVRTPRIFYVYSSAGSVRFASTLGSDAGKTLPLADSIXXXXXXXXXT 69
+ S + ++ +R P + + A RFA TL + +PL ++
Sbjct: 167 KTSVAFSDWIDRTALRLPVFGDILNKAAIARFARTLATTFAAGVPLVSALDSAAGASGNV 226
Query: 70 TISDAVSAVQSFAANGEPTFASIGLGGWGP 99
+A+ +++ + G+ +++ + G P
Sbjct: 227 VYRNAIIQIRNGVSTGQSLQSAVNMTGVFP 256
>SB_16409| Best HMM Match : DUF948 (HMM E-Value=0.57)
Length = 495
Score = 28.7 bits (61), Expect = 8.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 319 EYFKIPKLIKHSADALPIKKKGFVEGAKDSWTNMKLSKELAERQRI 364
E K +LI D L ++ EGA DS N ++L E+QRI
Sbjct: 80 EKLKQERLIGQLKDQLEEMERCVAEGASDSLGNEMSPEQLVEKQRI 125
>SB_46406| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)
Length = 319
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 292 GAILVYWCSSNFISLMQVGFLKIPAVREY 320
G +++ W S F+SL+Q+ ++ +P R Y
Sbjct: 144 GVLVLVWLFSLFVSLIQLAWIDLPDSRSY 172
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,193
Number of Sequences: 59808
Number of extensions: 417153
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 8
length of query: 396
length of database: 16,821,457
effective HSP length: 84
effective length of query: 312
effective length of database: 11,797,585
effective search space: 3680846520
effective search space used: 3680846520
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)
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