GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001464-TA|BGIBMGA001464-PA|IPR001708|60 kDa inner
membrane insertion protein
         (396 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    25   3.6  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 206 ISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIE-LGVDGGRL 264
           IS+        +C V++ ++    +F    VP    L P++ S  +      L  DG  L
Sbjct: 642 ISWLSSYLSNRSCRVKTGSYLSEEFFCTSGVPQGCVLSPLLFSLFINDVCNVLPPDGHLL 701

Query: 265 DAQNMQVMRYVLRAIPLVMIPFTINFPGAILVYWCSSNFISL 306
            A ++++   V  +   + +   +N      V+WCSSN + L
Sbjct: 702 YADDIKIFLPVSSSSDCMSLQHYLN----AFVHWCSSNLLRL 739


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 354,984
Number of Sequences: 2123
Number of extensions: 13260
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 1
length of query: 396
length of database: 516,269
effective HSP length: 65
effective length of query: 331
effective length of database: 378,274
effective search space: 125208694
effective search space used: 125208694
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 49 (23.8 bits)