GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001464-TA|BGIBMGA001464-PA|IPR001708|60 kDa inner
membrane insertion protein
         (396 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81029-7|CAB02698.2|  366|Caenorhabditis elegans Hypothetical pr...   147   1e-35
AC024827-3|AAF60807.2|  317|Caenorhabditis elegans Hypothetical ...    47   3e-05
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    30   2.5  
AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    29   5.7  

>Z81029-7|CAB02698.2|  366|Caenorhabditis elegans Hypothetical
           protein C01A2.3 protein.
          Length = 366

 Score =  147 bits (356), Expect = 1e-35
 Identities = 82/301 (27%), Positives = 149/301 (49%), Gaps = 4/301 (1%)

Query: 77  AVQSFAANGEPTFASIGLGGWG-PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFP 135
           +V    A+G      +GL  W  P    +   E +HV LD+PWW  IV  T+ +R ++  
Sbjct: 64  SVDELIASGASVLEELGLWTWWKPSSYFRWALESIHVHLDIPWWVTIVAATVTLRALLIG 123

Query: 136 LVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNL 195
           + ++SQ+  A+ +    E+   + ++ +AR+  NQ+   +   E   F++ K +   +  
Sbjct: 124 VPVMSQKLVAKQSMYRKEMNEFRDRIDEARKENNQLLQQQILLEQRDFLRSKDIRLGRQF 183

Query: 196 IVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATI 255
           +V  A   +F + F  ++ M       ++ GG  WF DLT  D Y+ LP I++ATM    
Sbjct: 184 MVMAANGAVFATQFFAIKKMVVVNYPGLSTGGTLWFTDLTATDPYYALPFISAATMALVT 243

Query: 256 ELGVDGGRLDAQNMQVMR-YVLRAIPLVMIPFTINFPGAILVYWCSSNFISLMQVGFLKI 314
           ++G++ G    Q   +MR ++   +P+V+   +  F   + VYW +SN +SL+     K+
Sbjct: 244 KVGIEMGTSADQMPPIMRAFMTYGLPVVIFGVSSQFATGLCVYWTASNAVSLIYAAAFKV 303

Query: 315 PAVREYFKIPKLIKHSADALPIKKKGFVEGAKDSWTNMKLSKELAERQRIDEMIFTKAGK 374
            A+R+ F IP ++     A  ++K    +  K    N  +   +A+ ++ D   F KAG+
Sbjct: 304 DAIRKIFGIPPVVPLPPSA--VQKNAISQVLKSYKDNKAIPPSMADLRQRDASSFKKAGR 361

Query: 375 G 375
           G
Sbjct: 362 G 362


>AC024827-3|AAF60807.2|  317|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.1 protein.
          Length = 317

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 4/157 (2%)

Query: 178 QEMMLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVP 237
           QE+   + E GL   +   + +   P++I     LR + N        G LW   D+  P
Sbjct: 150 QEVPAMLAEHGLQAARIQNLKMCTVPVWIFSSFALRNVINSDFHPSVAGHLW-IPDMLAP 208

Query: 238 DQYFLLPVITSATMWATI--ELGVDGGRLD-AQNMQVMRYVLRAIPLVMIPFTINFPGAI 294
           D YF+LPV      +  +  +  +  G +      +    VL    +  +      P  I
Sbjct: 209 DPYFILPVAVGVFGFLNLYSQRKIYPGVVKMTWKQKSYDGVLAFFTMFAVTIMAQLPACI 268

Query: 295 LVYWCSSNFISLMQVGFLKIPAVREYFKIPKLIKHSA 331
            +YW   +   + Q   L+ P ++  F I KL   SA
Sbjct: 269 PLYWLIVSTTGMAQAQMLRHPKIKGIFGIKKLPTDSA 305


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 14/52 (26%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 204 LFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATI 255
           +F+SF   ++ +++  +E++  GG  W + + +   +++L V+  A+ WATI
Sbjct: 110 IFLSFNRFIQ-LSSPTLENLFFGGRRWMIWIGIATSFWVLFVLALASPWATI 160


>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 112 VTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPE 153
           V  DVP+WG  V  TIV+ V +F  ++   +++    +NL E
Sbjct: 166 VEKDVPFWGFTVFLTIVIAVAIFATLLDYVQDAVLGLSNLKE 207


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,546,095
Number of Sequences: 27539
Number of extensions: 326114
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 4
length of query: 396
length of database: 12,573,161
effective HSP length: 83
effective length of query: 313
effective length of database: 10,287,424
effective search space: 3219963712
effective search space used: 3219963712
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)