Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001463-TA|BGIBMGA001463-PA|undefined
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036 31 1.9
05_05_0277 + 23780779-23781103,23781954-23782363,23782487-237830... 31 1.9
05_01_0453 - 3592555-3592897,3592997-3593067,3593372-3593465,359... 31 1.9
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 30 3.4
03_06_0777 + 36181095-36181311,36181444-36181530,36181785-361827... 30 3.4
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 29 6.0
03_02_0542 - 9348126-9349585,9352433-9352655 29 6.0
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 29 7.9
>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
Length = 420
Score = 30.7 bits (66), Expect = 1.9
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 197 RNS-VKKIDVTPEEKIGEFENIIRRCAANENSDQKTFKQDYNATKENEGEKMEKAPRDYK 255
+NS V +++ T +K + R AA N DQ + KE E E+++ +DYK
Sbjct: 119 KNSRVSQMEATLTDKNSHIRQMEER-AAGTNPDQMAALMELLQQKEAELEEIKVRFQDYK 177
Query: 256 RVTLEELAQKIQTRLQTGQNVNVPDQIIVNTINDNA 291
+ + K T +Q+ PD +V + ++
Sbjct: 178 TTERKSVGSK-STHVQSNNANARPDNAVVEKVTSSS 212
>05_05_0277 +
23780779-23781103,23781954-23782363,23782487-23783016,
23785904-23785991
Length = 450
Score = 30.7 bits (66), Expect = 1.9
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 50 DDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIK 92
DD+ EE E+ E D G N+HL E +G+YE R IK
Sbjct: 74 DDDHHEESAEEEEEDNQLQG--LNKHLAEYRIGQYEIRGATIK 114
>05_01_0453 -
3592555-3592897,3592997-3593067,3593372-3593465,
3593547-3593614,3593694-3593760,3593924-3594054,
3594145-3594252,3594671-3594757,3594991-3595056,
3595564-3595630,3596116-3596192,3596358-3596417,
3597363-3597480,3597833-3597906,3598216-3598312,
3599328-3599380,3599535-3599630,3599768-3599965,
3600556-3600722,3600813-3600882,3601428-3601448,
3602851-3602982
Length = 754
Score = 30.7 bits (66), Expect = 1.9
Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 167 KELKEGTLSISEDVRAHFLKFSERTIPPL--NRNSVKKIDVTPEEKIGEFENIIRRCAAN 224
++ G +S+ E++ F + E T L + + K+ + + +R
Sbjct: 329 QDKSSGNISV-ENIEDQFSRLLENTNRSLIMRKFVIDKLKILADSLANSSSKAEQRIL-- 385
Query: 225 ENSDQKTFKQDYNATKENEGEKMEKAPRDYKRVTLEELAQKIQTRL-QTGQNVNVPDQII 283
EN QK ++ KENE +EK D + LE+ +++ +L + N+ + Q +
Sbjct: 386 ENRRQKEDALNFRVKKENEVSTVEKEVLD-EIAELEKQRDELEAQLKKVSLNMEIAIQDL 444
Query: 284 VNTINDNAVLESKSVNINKSIEIFDNDNKNNLVQYQPKNDSKD 326
I D ++KS+++ K + I N L + + + D D
Sbjct: 445 AYPIGDR---DTKSLSMIKMVNISLNAAAGRLKKTREERDQFD 484
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 29.9 bits (64), Expect = 3.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 285 NTINDNAVLESKSVNINKSIEIFDNDNKNNLVQYQP 320
N+ +DNA E VN S+ ++ N+NN + YQP
Sbjct: 720 NSADDNACKEENFVNNQSSVSKAESFNQNNDMIYQP 755
>03_06_0777 +
36181095-36181311,36181444-36181530,36181785-36182725,
36182956-36183006,36183240-36183328,36184975-36185078,
36185179-36185278,36185396-36185471,36185556-36185670,
36185755-36186286,36187032-36187527
Length = 935
Score = 29.9 bits (64), Expect = 3.4
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 231 TFKQDYNATKENEG-EKMEKAPRDYKRVTLEEL-AQKIQTR--LQTGQNVNVPDQIIVNT 286
TF+++ TKE E E++EK + RV L++L A++++ L G+ + +++
Sbjct: 657 TFEREL--TKEREKIERLEKLAEE-ARVELDKLRAERVEENNALIRGRASVESEMEVLSK 713
Query: 287 INDNAVLESKSVNINKSIEIFDNDNKNNLVQYQPKNDSKDVMDYPERIRIPKKA 340
+ + +SV ++K +EI N+ +Q + +ND + V+ + + +KA
Sbjct: 714 LRSEVEEQLQSV-LSKKVEISFEKNRIEKLQTEIENDRQAVVQLQYELEVERKA 766
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 29.1 bits (62), Expect = 6.0
Identities = 22/113 (19%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 199 SVKKIDVTPEEKIGEFENI--IRRCAANENSDQKTFKQDYNATKENEGEKMEKAPRDYKR 256
+VK+I P++ + EN+ +R + N + F + +E +++ Y+
Sbjct: 867 AVKRISTAPKQ-VNNIENLSHLRYVSYGSNGFGEFFVGRLTSLQELHNFEIQ-LKEGYRI 924
Query: 257 VTLEELAQKIQTRLQTGQNVNVPDQIIVNTINDNAVLESKSVNINKSIEIFDN 309
+L L+ + ++ +NV ++II + D + L S S+N +++ + +
Sbjct: 925 SSLRNLSSICKLQICNFENVGTHEEIIEAKLRDKSYLRSLSLNWSETTNVLSH 977
>03_02_0542 - 9348126-9349585,9352433-9352655
Length = 560
Score = 29.1 bits (62), Expect = 6.0
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 186 KFSERTIPPLNRNSVKKIDVTPEEKIGEFENIIRRCAANENSDQKTFKQDYNATKENEGE 245
KF IPP R V +I+VT N+ S+ T K D + E E
Sbjct: 476 KFVLTGIPPAPRG-VPQINVTFSIDYNGIMNVSAEDKTTGRSNSITIKSDKGRLSKEEIE 534
Query: 246 KMEKAPRDYKRVTLEEL 262
+M K YK EE+
Sbjct: 535 RMVKKAEKYKAEDEEEM 551
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 28.7 bits (61), Expect = 7.9
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 259 LEELAQKIQTRLQTGQNVNVPDQIIVNTINDNAVLESK-SVNINKS--IEIFDNDNKNNL 315
L E Q RL T N ++P+ + NT + E + S N+N++ +E+ +N N+
Sbjct: 142 LTETNDSPQERLLTEINDSLPNHVDDNTHSVTFTSEPETSGNVNETADLELPSAENVNDN 201
Query: 316 VQYQPKNDS 324
V+ P NDS
Sbjct: 202 VENLPANDS 210
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,693,195
Number of Sequences: 37544
Number of extensions: 375658
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 9
length of query: 369
length of database: 14,793,348
effective HSP length: 83
effective length of query: 286
effective length of database: 11,677,196
effective search space: 3339678056
effective search space used: 3339678056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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