GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001463-TA|BGIBMGA001463-PA|undefined
         (369 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   2.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   5.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   7.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   9.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   9.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 194 PLNRNSVKKIDVTPEEKIGEFENIIRRCAANENSDQKTFKQDYNATKE 241
           PL R +++ +      KIG+  N++     +  S+ KT     NA  E
Sbjct: 559 PLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKTINAVVNALAE 606


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 194 PLNRNSVKKIDVTPEEKIGEFENIIRRCAANENSDQKTFKQDYNATKE 241
           PL R +++ +      KIG+  N++     +  S+ KT     NA  E
Sbjct: 527 PLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKTINAVVNALAE 574


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 208 EEKIGEFENIIRRCAANENSDQKTFKQDYNATKENEGEKMEKAPRDYKRVTLEELAQKIQ 267
           +EK+ E     +R + +   +QK++K + +  K  E  K     R  +  + E   +KI 
Sbjct: 259 KEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSKE---RKII 315

Query: 268 TRLQTGQNVNVPDQIIVNTINDNAVLESKSVNIN 301
           + L    N N  +    N  N N  L  K+  IN
Sbjct: 316 SSLSNNYNYN-NNNYKYNYNNYNKKLYYKNYIIN 348


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 306 IFDNDNKNNLVQYQPKNDSKDVMDYPERIRIPKKAYKKNATYKVND 351
           IF+ D  +NL+  Q KN S  V++  +++ +  K    +A   +ND
Sbjct: 34  IFNEDKLDNLMDKQFKNKSLPVIEIWDQMTV--KELANSAKRDIND 77


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 274 QNVNVPDQIIVNTINDNAVLESKSVNINKSIEIFDNDNKNNLVQYQPKNDS 324
           + V +P  +      +   L  ++++   ++ ++  DNKN L+ YQ  +DS
Sbjct: 171 KQVEIPHDVATTGKGELVSLTVQAMDSTNTM-VYMVDNKNTLIIYQNADDS 220


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 58 VEQSESDFYKVGEVYNEHLNETLMGKYEQR 87
          V++S + F K  ++Y ++ NE ++G Y  R
Sbjct: 52 VKKSTAHFVK--DIYEKYKNEPMVGLYATR 79


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 300 INKSIEIFDNDNKNNLVQ 317
           +NK  E  D D KN L++
Sbjct: 182 MNKIAETLDEDTKNKLIE 199


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 208 EEKIGEFENIIRRCAANENSDQKTFKQDYNATKENEGEKMEKAPRDYKRVTLE 260
           +EK+ E     +R + +   +QK++K +    K  E  K     R  +  + E
Sbjct: 26  KEKLLEERTSRKRYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSKE 78


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 208 EEKIGEFENIIRRCAANENSDQKTFKQDYNATKENEGEKMEKAPRDYKRVTLE 260
           +EK+ E     +R + +   +QK++K +    K  E  K     R  +  + E
Sbjct: 26  KEKLLEERTSRKRYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSKE 78


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,053
Number of Sequences: 429
Number of extensions: 5280
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 9
length of query: 369
length of database: 140,377
effective HSP length: 59
effective length of query: 310
effective length of database: 115,066
effective search space: 35670460
effective search space used: 35670460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)