Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001462-TA|BGIBMGA001462-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
(280 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 34 0.026
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 32 0.080
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 32 0.11
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 31 0.14
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 30 0.42
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 29 0.74
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 28 1.3
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 28 1.3
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 28 1.7
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 27 2.3
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 27 2.3
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 27 4.0
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 5.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 9.1
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 9.1
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 33.9 bits (74), Expect = 0.026
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 64 TSRDPTASKLKTAFSITSVTTYEAGE--DEILIHELDDPNLENFEFYDLVKTFAMQADYW 121
+S P + T I ++ EA E I +H + + + EN Y ++++A YW
Sbjct: 1737 SSPPPIHTNFDTNADIITLFEKEANEHPSSIALHFVYNVDKENIYSYKFFSEYSIKASYW 1796
Query: 122 LNNIPLFPRGHI-VLIDAKHFYLKI---VSRVNIFFF 154
L++I + + V ID Y + V R+ FFF
Sbjct: 1797 LHSIGIKKNDVVAVFIDKSLDYYSLMLGVLRIGAFFF 1833
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 32.3 bits (70), Expect = 0.080
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 101 NLENFEFYDL--VKTFAMQADYWLNNIPLFPRGHIVL--IDAKHFYLKIVSRVNIFFFKQ 156
+L F+ YDL + +F Q Y L ++PRG+ V ++ + YLK+ V F F+
Sbjct: 256 SLPYFQHYDLRFIASFFTQF-YRLRLHQVYPRGNWVFTCLNGYYPYLKLTLLVG-FLFRL 313
Query: 157 FLVYLL 162
FLVYLL
Sbjct: 314 FLVYLL 319
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 144 KIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYNSPAYYDKLFSLV 188
++ +N+FFF F V+ P+ K IHV++ Y D L +LV
Sbjct: 220 RLEKSINVFFFILFAVHWFALFPIFRKYIHVFS--FYADMLMTLV 262
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 31.5 bits (68), Expect = 0.14
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 129 PRGHIVLIDAKHFYLKIVSRVNIFFFKQFLVYLLEAM-PVRIKQIHVYNSPAYYDKLFSL 187
P+ VL D +F L + + F ++L LE P + ++ SP + ++++
Sbjct: 199 PQNVNVLFDLSNFSLHNMD----YSFVKYLASCLEYYYPQSLGVCILHKSPWIFRSVWNI 254
Query: 188 VKPVLPQEICDMIKFHLEIEGLYAHVDKKYLPVELGG 224
+K + EI I F L ++D +P LGG
Sbjct: 255 IKGWIKPEIAAKIVFTQSANDLEKYIDYSVIPTSLGG 291
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 29.9 bits (64), Expect = 0.42
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 31 LKKFIHSCYGSLEKTKQCIDKFCVGRTNTPELYTSRDPTASKLKTAFSITSVTTYEAGED 90
L+K I + Y +L+ T++ D N PEL+ S DPT ++ + T ++ +
Sbjct: 40 LEKEIANEYEALKVTERKED---TQDYNEPELHNSNDPTVDLYADTYATQAATESDSELE 96
Query: 91 EILIHELDD 99
+ L +LD+
Sbjct: 97 DALFSQLDE 105
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 29.1 bits (62), Expect = 0.74
Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 94 IHELDDP-NLENFEFYDLVKTFAMQ-ADYWLNNIPLFPRGHIVLIDAKHFYLKIVSRVNI 151
+H P N ++ E + +AM+ A +L++ +G + L+D +F K +++
Sbjct: 123 LHNFIPPKNTKDMEELKALILYAMENARLFLDSEQNAAKGVLGLVDLTYFSRK---NIDL 179
Query: 152 FFFKQFLVYLLEAMPVRIKQIHVYNSP---AYYDKLFSLVKPVLPQEICDMIKFHLEIEG 208
F + F P + Q + S A ++ ++S+ K L E+ + F +
Sbjct: 180 DFARVFAETFQNYYPEILGQALIVGSGFRMALFEGVWSIGKYFLDPEVRSKVTFCKPAQ- 238
Query: 209 LYAHVDKKYLPVELGGEAPSMK 230
+ +VD KY+P+ + G+ K
Sbjct: 239 VSGYVDSKYIPLSMHGQFDETK 260
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 156 QFLVYLLEA-MPVRIKQIHVYNSPAYYDKLFSLVKPVLPQEICDMIKFHLEIEGLYAHVD 214
+F++ EA P + + V+ +P + ++S++K L + +KF L +++
Sbjct: 255 KFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSWLDPVVVSKVKFTRNYRDLQQYIN 314
Query: 215 KKYLPVELGGEAP 227
+ E GG P
Sbjct: 315 PDNILKEFGGPNP 327
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 122 LNNIPLFPRGHIVLIDAKHFYLKIVSRVN 150
L +I LFP+ H+V+ H+YL IV+ +N
Sbjct: 220 LPDISLFPKSHVVIF---HYYLGIVAFLN 245
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 1.7
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Query: 68 PTASKLKTAFSITSVTTYEAGEDEILIHELDDPNLENFEFYDLVKTFAMQADYWLNNIPL 127
P AS F + + ++ +ILI D NL FYD K +W P
Sbjct: 225 PDASS-SLLFELADIKQHKKTSADILIFLSKDHNLP-VSFYDNYK-LKYTLHFW--QPPS 279
Query: 128 FPRGHIVLIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVY 175
FP + AK + +VS+V + + +Y + + V + HVY
Sbjct: 280 FPDSSTIDDQAKLLFDYVVSQVVKYPYFVTDIYQIHLLGVYLNLKHVY 327
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 162 LEAMPVRIKQIHV-YNSPAYYDKLFSLVKPVLPQEICDMIKFHL 204
++ P+RI + V Y SPA +++F + Q D+ KFHL
Sbjct: 37 IDNAPLRINPVGVQYLSPALQNQVFPQQNTQISQLHLDLAKFHL 80
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 150 NIFFFKQF-LVYLLEAMPVRIKQIHVYNSPAYYDKLFSLVKPVLPQEICDMIKFHL 204
N F F +YL+ + RIK+I +N Y+D +FS K ++ ++C + H+
Sbjct: 4 NYVFSNSFSFLYLMVNVQCRIKEIMYWNICLYWD-VFS--KLIIYNKVCQFGRIHI 56
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 159 VYLLEAMPVRIKQIHVYNSPAYYDKLFSLVKPVL----PQEICDM 199
+Y L+ + +++ Q HV++ D F LVKP+L P+ + D+
Sbjct: 1 MYSLKDLCIQVAQKHVHDIDDIGDCPFELVKPILEKARPEHLIDL 45
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 115 AMQADYWLNNIPLFPRGHIVLIDAKHFYLKIVSRVNIFFFK 155
AM ADY + + +VL+ + Y ++ VN FF+K
Sbjct: 1038 AMSADYAIGQFRFLSK--LVLVHGRWDYNRVAEMVNNFFYK 1076
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 49 IDKFCVGRTNTPELYTSRDPTASKLKTAFSITSVTTYEAGED 90
+++ R + P++ T +D L + +++ S+T +GED
Sbjct: 1346 LEQILNSRLSIPDVRTFQDNFIDSLPSIWNVVSITINNSGED 1387
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 55 GRTNTPELYTSRDPTASKLKTAFSITSVTTYEAGEDEILIHELDDPNLEN 104
GRT E+Y +++P L+ A E G +IL+ + +E+
Sbjct: 251 GRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEIED 300
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 64 TSRDPTASKLKTAFSITSVTTYEAGEDEILIHELDDPNLENFEF 107
T R P+ +K +A V D +++ N ENFEF
Sbjct: 175 TRRLPSQAKKTSAIERVPVNLNFLQSDNLVVQSSPQTNFENFEF 218
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,674
Number of Sequences: 5004
Number of extensions: 61818
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 18
length of query: 280
length of database: 2,362,478
effective HSP length: 72
effective length of query: 208
effective length of database: 2,002,190
effective search space: 416455520
effective search space used: 416455520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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