Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001462-TA|BGIBMGA001462-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
(280 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 30 1.8
06_03_1376 - 29687417-29687536,29687622-29687688,29688448-296885... 30 1.8
02_05_0770 - 31623415-31623960,31624467-31624709,31624808-316249... 30 2.4
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402... 30 2.4
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 29 3.2
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 29 4.2
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 5.5
12_01_0812 - 7460448-7460507,7460595-7460672,7460772-7460981,746... 28 7.3
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 28 7.3
03_06_0307 + 33027012-33027167,33028505-33028615,33028927-330290... 28 7.3
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958... 28 7.3
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 28 9.6
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 28 9.6
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 16 LAKEDYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCV 54
L K++ L D +M ++KF++ + KTKQ I C+
Sbjct: 815 LKKDEPLESDCFNMAIRKFMYEKIEMIHKTKQAISNHCL 853
>06_03_1376 -
29687417-29687536,29687622-29687688,29688448-29688504,
29689365-29689435,29690326-29690385,29690470-29690601,
29690828-29690986
Length = 221
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 2 QIDYERDISLIREWLAKEDYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCVG 55
++D + IR+ LAK++ +L L K+ IHS LE K + K+C+G
Sbjct: 152 RLDLNLERGRIRDELAKQNEETTELTTKLDKE-IHSLKAQLEAAKYDVIKYCIG 204
>02_05_0770 -
31623415-31623960,31624467-31624709,31624808-31624906,
31625058-31625234,31625441-31625512
Length = 378
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 124 NIPLFPRGHIVLIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYNSPAYYDK 183
N+P + LID F L S +++ K L P R+ +YN+P +++
Sbjct: 138 NLPHDQSQMVWLIDFAGFSL---SNISLHVTKLTADVLQGHYPERLGVAILYNAPKFFES 194
Query: 184 LFSLVKPVLPQEICDMIKF 202
+ + P+L + + +KF
Sbjct: 195 FWKIASPILEPKTFNKVKF 213
>01_03_0047 +
11939747-11939857,11940058-11940121,11940123-11940253,
11940325-11940432,11942735-11942783,11943188-11943279,
11944394-11944468,11944553-11944658,11944740-11944786,
11944856-11944913,11945299-11945348,11945728-11945784,
11945909-11945916,11946020-11946055,11946904-11946937,
11947030-11947092,11947223-11947237
Length = 367
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 16 LAKEDYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCV 54
+ K+ L +D +M ++KF++ SL KT + I K C+
Sbjct: 59 ILKDGPLDRDCFNMAIRKFMYENIQSLHKTSEAITKHCL 97
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 166 PVRIKQIHVYNSPAYYDKLFSLVKPVLPQEICDMIKF-HLEIEG----LYAHVDKKYLPV 220
P R+ ++N P ++ + +VK L + + F +L+ E L+ ++D + LPV
Sbjct: 144 PERLAIGILFNPPKVFEAFWKVVKHFLDPKSIQKVNFVYLKNEESMKILHKYIDPEVLPV 203
Query: 221 ELGGEAPSMKDQQKKWVKIITESRDMYLNDNLWKADMK 258
E GG+ ++ +++ K++ +D + W +D K
Sbjct: 204 EFGGK-NNVVYSHEEYSKLMV--KDDIKMASFWASDTK 238
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 16 LAKEDYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCV 54
L K++ L D +M ++KF++ + KTK+ I C+
Sbjct: 25 LKKDEPLESDCFNMAIRKFMYEKIEMIHKTKEAISNHCL 63
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/73 (23%), Positives = 33/73 (45%)
Query: 117 QADYWLNNIPLFPRGHIVLIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYN 176
+ D +LN + L+D + + + + VN+ + +Y M VR+ + +
Sbjct: 778 EQDMYLNFNLVLSDVSAFLVDGDYHWNERSNEVNLLIQLESALYPSTRMAVRVPSLGFHF 837
Query: 177 SPAYYDKLFSLVK 189
SPA Y +L + K
Sbjct: 838 SPARYHRLMEIFK 850
>12_01_0812 -
7460448-7460507,7460595-7460672,7460772-7460981,
7461095-7461142,7461270-7461455,7461653-7461656,
7461766-7461893
Length = 237
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 135 LIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYNSPAYYDKLFSLVKPVLPQ 194
L+D + KIV FFF Y+L V ++Q+ N ++ D+++S +K + +
Sbjct: 61 LVDRWRNHKKIVISETRFFFYLDRYYILRKSLVPLEQL---NLCSFRDQVYSELKDKITR 117
Query: 195 EICDMI 200
+ DMI
Sbjct: 118 TVVDMI 123
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 7 RDISLIREWLAKEDYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCVG 55
R +S WLA EDY P LG L +H+ L+ + +D F G
Sbjct: 288 RRVSFRTMWLASEDY-PLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCG 335
>03_06_0307 +
33027012-33027167,33028505-33028615,33028927-33029065,
33029215-33029323,33029422-33029425
Length = 172
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 214 DKKYLPVELGGEAPSMKDQQKKWVKIITES 243
++KY+ + GG P M +++ KW K I E+
Sbjct: 94 NEKYVSLFSGGNTPDMLEKRNKWRKQIKEN 123
>03_02_0844 +
11695159-11695263,11695402-11695463,11695789-11695876,
11695958-11696019,11696250-11696346,11696592-11696984,
11697072-11697611,11697856-11697966,11698102-11698242,
11698290-11698394,11698480-11698557,11699346-11699472,
11699580-11699625,11699709-11699754
Length = 666
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 56 RTNTPELYTSRDPTASKLKTAFSITSVTTYEAGEDEILIHELD 98
+++ P YTS D + S+ +AF SV+T +A D L+ ++
Sbjct: 433 QSDVPCKYTSSDASNSQAWSAFEAKSVSTQQASPDLSLMSSIE 475
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 27.9 bits (59), Expect = 9.6
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 16 LAKE--DYLPQDLGDMLLKKFIH-SCYGSLEKTKQCIDKFCVGRTNTP------ELYTSR 66
LA+E YL DLG +L+K+F Y L+++ + D F V T +P EL+
Sbjct: 101 LAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMI 160
Query: 67 DPTASKLKTAFSITSVTTY 85
D A + +A SIT V Y
Sbjct: 161 D--ACRRASARSITVVIPY 177
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 192 LPQEICDMIKFHLEIEGLYAHVDKKYLPVELGG---EAPS 228
+P + +++K HL+ EG VDK YL L G +APS
Sbjct: 579 MPDLVVEVMKDHLDDEGEMETVDKLYLYRSLAGARNDAPS 618
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,087,359
Number of Sequences: 37544
Number of extensions: 336885
Number of successful extensions: 670
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 14
length of query: 280
length of database: 14,793,348
effective HSP length: 81
effective length of query: 199
effective length of database: 11,752,284
effective search space: 2338704516
effective search space used: 2338704516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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