GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001462-TA|BGIBMGA001462-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (280 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           30   1.8  
SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)                 29   5.6  
SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)            28   9.8  

>SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 86  EAGEDEILIHELDDPNLENFEFYDLVKTFAMQADYWLNNIPLFPRGHIVLIDAKHFYLKI 145
           +AG + +LI ELD  NL +++   L++   M A  W  ++  F  GH+V I      L +
Sbjct: 239 KAGVNHVLIFELDPRNLLSYQ--QLLEVAGMIAIVWALSLTAFMFGHVVGIPYYLPNLVL 296

Query: 146 VSRVNIFFFKQF 157
           VS + +F F  F
Sbjct: 297 VSLLVVFMFNPF 308


>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 176 NSPAYYDKLFSLVKPVLPQEICDMIKFHLEIEGLYAHVDKKYLPVELGGEAPSMKDQQKK 235
           +SPA    L S+  P        M  FH +I G++ H+    LP   G  +P +   Q++
Sbjct: 373 DSPASTSLLSSVHSPTTSTPSSAMDPFHGKIYGIFEHITTDKLPDPSGRISPGVPLPQQR 432

Query: 236 W 236
           W
Sbjct: 433 W 433


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 183 KLFSLVKPVLPQEICDMIKFHLEIEGLYAHVDKKYLPVELGGEAPSMKDQQKKWVK--II 240
           KL   V+P+ P ++   +K H+ + G + H+    L V     AP    ++K+ V   I+
Sbjct: 627 KLSVQVEPISPFQVVQFLKHHVSVTGQWTHIAMAALSV----FAPDTHSEEKQTVNDLIL 682

Query: 241 TESRDMYLNDNL 252
               ++ +N NL
Sbjct: 683 HNLENVSVNKNL 694


>SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)
          Length = 1052

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 183 KLFSLVKPVLPQEICDMIKFHLEIEGLYAHVDKKYL-PVELGGEAPSMKDQQKKW 236
           K   L +PV P  +   +K   E    Y + + KYL P+E G +       +K+W
Sbjct: 899 KRLLLPQPVNPDTVVKALKTRQEKAAAYYNQNSKYLPPLESGSKVRIRTGSEKQW 953


>SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 183 KLFSLVKPVLPQEICDMIKFHLEIEGLYAHVDKKYL-PVELGGEAPSMKDQQKKW 236
           K   L +PV P  +   +K   E    Y + + KYL P+E G +       +K+W
Sbjct: 899 KRLLLPQPVNPDTVVKALKTRQEKAAAYYNQNSKYLPPLESGSKVRIRTGSEKQW 953


>SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)
          Length = 373

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 93  LIHELDDPNLENFEFYDLVKTFAMQADYWLNNIP-LFPRGHIVLIDAKHFYLKIV 146
           L+H++D  N  ++    L+KT  + A Y L+  P L P  +I   + +H+Y+ ++
Sbjct: 115 LLHDIDCQNTRHYCPTLLIKTPGITAQYCLSKHPALLP--NIACQNTRHYYMTLL 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,466,562
Number of Sequences: 59808
Number of extensions: 389687
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 7
length of query: 280
length of database: 16,821,457
effective HSP length: 81
effective length of query: 199
effective length of database: 11,977,009
effective search space: 2383424791
effective search space used: 2383424791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)