GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001462-TA|BGIBMGA001462-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (280 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical pr...    40   0.003
U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical pr...    37   0.018
Z72508-9|CAA96639.2|  410|Caenorhabditis elegans Hypothetical pr...    35   0.074
AJ252168-1|CAB65731.1|  346|Caenorhabditis elegans T-box DNA bin...    29   2.8  
AF025468-3|AAF02176.1|  346|Caenorhabditis elegans Male abnormal...    29   2.8  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin recepto...    29   4.9  
AY064245-1|AAL40865.1| 1003|Caenorhabditis elegans insulin recep...    29   4.9  
Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81479-11|CAB03945.2|  324|Caenorhabditis elegans Hypothetical p...    28   6.5  
AY552606-1|AAS89253.1|  324|Caenorhabditis elegans heparan sulfa...    28   6.5  
Z81072-13|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z81017-4|CAB02668.1|  181|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U56081-1|AAB37243.1|  346|Caenorhabditis elegans T-BOX 12 protein.     28   8.5  

>Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical
           protein F18A11.2 protein.
          Length = 388

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 161 LLEAMPVRIKQIHVYNSPAYYDKLFSLVKPVLPQEICDMIKFHLE--IEGLYAHVDKKYL 218
           L +  P  +++I + N+P++ + L     P LP++  + I    E  I  +  H DK +L
Sbjct: 176 LFDHYPQLLQKIIIVNAPSFVNVLHQACSPFLPEDYKEKIVITSEPAIGAIQKHADKCFL 235

Query: 219 PVELGGE 225
           P +LGG+
Sbjct: 236 PSDLGGD 242


>U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical
           protein T27A10.7 protein.
          Length = 383

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 16/72 (22%), Positives = 36/72 (50%)

Query: 131 GHIVLIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYNSPAYYDKLFSLVKP 190
           G I+++D   F + ++    +  +   L  L    P   ++I++ N PA    ++++V P
Sbjct: 162 GVIIIMDLDGFSMDLLYTPTLKVYMSLLTMLQNIFPDFARRIYIINCPAMMSAVYAMVSP 221

Query: 191 VLPQEICDMIKF 202
           VL  +  + ++F
Sbjct: 222 VLSSQTREKVRF 233


>Z72508-9|CAA96639.2|  410|Caenorhabditis elegans Hypothetical
           protein F28H7.8 protein.
          Length = 410

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 169 IKQIHVYNSPAYYDKLFSLVKPVLPQEICDMIKFHLE--IEGLYAHVDKKYLPVELGGEA 226
           I +  V NSP+Y + L+S + P +P++    I F      E L   VDK+ LP   GG  
Sbjct: 194 IDKFIVINSPSYINVLWSALSPFIPEQSKQRIVFAGSNWKEELLDIVDKECLPERYGGMI 253

Query: 227 PSMK 230
           P ++
Sbjct: 254 PDIQ 257


>AJ252168-1|CAB65731.1|  346|Caenorhabditis elegans T-box DNA
           binding protein protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 20  DYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCVGRTNTPELYTSRDPTASKLKTA 76
           D + +  GDM+L  F HS        +QC+ K      +   LY +  PT + L  A
Sbjct: 275 DEMERSPGDMMLSNFYHSSALQQAMFQQCLSKTLQLNPSIMMLYQNVFPTGNSLPAA 331


>AF025468-3|AAF02176.1|  346|Caenorhabditis elegans Male abnormal
           protein 9 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 20  DYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCVGRTNTPELYTSRDPTASKLKTA 76
           D + +  GDM+L  F HS        +QC+ K      +   LY +  PT + L  A
Sbjct: 275 DEMERSPGDMMLSNFYHSSALQQAMFQQCLSKTLQLNPSIMMLYQNVFPTGNSLPAA 331


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 161 LLEAMPVRIKQIHVY-NSPAYYDKLFSLVKPVLPQEICDMIKFHLEIEGLYAHVDKKYL 218
           +++A+ + + Q+H + +S  Y D L  L+K     E  D +   L+  G Y  VDKK L
Sbjct: 906 VIKAIGIPVAQMHKWMDSTEYVDALVDLLKA---SETFDNLNQLLDFHGKYTTVDKKPL 961


>U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin receptor
           substrate homologprotein 1 protein.
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 214 DKKYLPVELGGEA---PSMKDQQKKWVKIITESRDMYLNDNLWK--ADMKKRAKSKGADT 268
           DK++ P    G A   PS     KK  K    S   Y++    K  AD+KKR K +GA  
Sbjct: 827 DKEFRPKADSGIADCTPSSSFSGKKDHKNDGSSDSAYMDKEGLKYLADIKKRKKEQGAID 886

Query: 269 AMNGSFRSLS 278
             N S  SLS
Sbjct: 887 TTNSSSSSLS 896


>AY064245-1|AAL40865.1| 1003|Caenorhabditis elegans insulin receptor
           substrate-likeprotein protein.
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 214 DKKYLPVELGGEA---PSMKDQQKKWVKIITESRDMYLNDNLWK--ADMKKRAKSKGADT 268
           DK++ P    G A   PS     KK  K    S   Y++    K  AD+KKR K +GA  
Sbjct: 827 DKEFRPKADSGIADCTPSSSFSGKKDHKNDGSSDSAYMDKEGLKYLADIKKRKKEQGAID 886

Query: 269 AMNGSFRSLS 278
             N S  SLS
Sbjct: 887 TTNSSSSSLS 896


>Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical
           protein K10G4.4 protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 25  DLGDMLLKKFIHSCYGSLEKTKQCIDKFCVGRTNTPELYTSRDPTASKLKTAFSITSVTT 84
           ++   LL+ F    +      +QC   +C+  +N+   +    P ++ LK + S T V  
Sbjct: 518 NVAQKLLEIFGPPAHEEYASAEQCDRIWCIPISNSDNCHPISQPISNTLKYSISNTLVKK 577

Query: 85  YEAGEDEILIHELDDPNLE-NF 105
            EA ++  L  ++D+  ++ NF
Sbjct: 578 IEASKNWSLKVKIDEGQVQINF 599


>Z81479-11|CAB03945.2|  324|Caenorhabditis elegans Hypothetical
           protein C34F6.4 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 113 TFAMQADYWLNNIPLFPRGHIVLIDAKHFYLKIVSRVNI 151
           TF      W   +P F  GH+  ID + F +     +NI
Sbjct: 90  TFVNNITTWTERLPAFYHGHVAFIDFQRFGIANPIYINI 128


>AY552606-1|AAS89253.1|  324|Caenorhabditis elegans heparan sulfate
           2O-sulfotransferase protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 113 TFAMQADYWLNNIPLFPRGHIVLIDAKHFYLKIVSRVNI 151
           TF      W   +P F  GH+  ID + F +     +NI
Sbjct: 90  TFVNNITTWTERLPAFYHGHVAFIDFQRFGIANPIYINI 128


>Z81072-13|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 80  TSVTTYEAGEDEILIHELDDPNLENFE 106
           TS    EAG+DE L  E + PN EN E
Sbjct: 569 TSAAATEAGDDEELRAESETPNPENAE 595


>Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical
           protein F23A7.7 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 194 QEICDMIKFHLEIEGLYAHVDKKYLPVEL--GGEAPSMK--DQQKKWVKIITESRDMYLN 249
           Q I      +L++E +Y    +  +   L  G ++PS K  D+  +WV I  +    YL+
Sbjct: 276 QHIWPYCLLNLDLEDVYRASPQALILAALFIGPKSPSTKIHDRITQWVMIQMDENLFYLD 335

Query: 250 DNLWKADM 257
              WKA++
Sbjct: 336 GIAWKAEI 343


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 80  TSVTTYEAGEDEILIHELDDPNLENFE 106
           TS    EAG+DE L  E + PN EN E
Sbjct: 569 TSAAATEAGDDEELRAESETPNPENAE 595


>Z81017-4|CAB02668.1|  181|Caenorhabditis elegans Hypothetical
           protein F58A3.3 protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 182 DKLFSLVKPVLPQEICDMIKFHLEIE 207
           DK+F+ V+P+ P   C + KF   IE
Sbjct: 138 DKIFTSVRPIPPSSTCLLTKFFPRIE 163


>U56081-1|AAB37243.1|  346|Caenorhabditis elegans T-BOX 12 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 20  DYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCVGRTNTPELYTSRDPTASKL 73
           D + +  GDM+L  F HS        +QC+ K      +   LY +  PT + L
Sbjct: 275 DEMERSPGDMMLSNFYHSSALRQAMFQQCLSKTLQLNPSIMMLYQNVFPTGNSL 328


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,283,050
Number of Sequences: 27539
Number of extensions: 322328
Number of successful extensions: 736
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 19
length of query: 280
length of database: 12,573,161
effective HSP length: 80
effective length of query: 200
effective length of database: 10,370,041
effective search space: 2074008200
effective search space used: 2074008200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)