GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001461-TA|BGIBMGA001461-PA|IPR001071|Cellular
retinaldehyde binding/alpha-tocopherol transport, IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (520 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   5.2  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   6.8  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   6.8  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 120 LTTDSWLLSDKKLEEDDMVIMDVKDISLKFIT 151
           L  D  +LSD  L + D+     +D+SL  ++
Sbjct: 161 LNVDDHILSDPSLMDADLEFKGAQDLSLLHVS 192


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 399 LFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDL 435
           LF P L SDV   +    P      D++  +D+  D+
Sbjct: 174 LFYPFLPSDVSYNLFSFVPLVVNALDHLFLNDILSDI 210


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 399 LFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDL 435
           LF P L SDV   +    P      D++  +D+  D+
Sbjct: 130 LFYPFLPSDVSYNLFSFVPLVVNALDHLFLNDILSDI 166


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,671
Number of Sequences: 317
Number of extensions: 5412
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 520
length of database: 114,650
effective HSP length: 60
effective length of query: 460
effective length of database: 95,630
effective search space: 43989800
effective search space used: 43989800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)