GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001461-TA|BGIBMGA001461-PA|IPR001071|Cellular
retinaldehyde binding/alpha-tocopherol transport, IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    44   7e-05
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    34   0.055
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    33   0.096
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    30   0.68 
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   3.6  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   4.8  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   4.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   6.3  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   8.4  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    27   8.4  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   8.4  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 132 LEEDDMVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLYAL 191
           L E    IMD+K + +  I     S  ++ S   +D  P R+ + +++NAP      + L
Sbjct: 164 LIETSCTIMDLKGVGITSIHSV-YSYIRQASSISQDYYPERMGKFYVINAPWGFSSAFNL 222

Query: 192 LKPFMKQEITNMIHFHTPN-SQTLYDFVKKEDLPSDYGG 229
           +K F+ +     IH    N    L + +  ++LP+  GG
Sbjct: 223 IKGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGG 261



 Score = 36.7 bits (81), Expect = 0.008
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 378 PMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPN-SNTLFDYVHKDDLPKDLG 436
           P R+ + +VIN P      ++L K  L     +KIH    N  + L + +  D+LP  LG
Sbjct: 201 PERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLG 260

Query: 437 G 437
           G
Sbjct: 261 G 261


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 33.9 bits (74), Expect = 0.055
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 380 RLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGG 437
           RL +  VIN P  V   + L  P +    +EK+ F+ P    L  YV KD L  + GG
Sbjct: 769 RLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEP----LDRYVPKDQLDSNFGG 822



 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 172 RLKQIHIVNAPPFVDKLYALLKPFMKQEITNMIHFHTPNSQTLYDFVKKEDLPSDYGGT 230
           RL +  ++N P  V   + L+ PF+       + F+ P    L  +V K+ L S++GG+
Sbjct: 769 RLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEP----LDRYVPKDQLDSNFGGS 823


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 33.1 bits (72), Expect = 0.096
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 151 TKFNVSVAKKLSKYQED---AMPIRLKQIHIVNAPPFVDKLYALLKPFMKQEITNMIHFH 207
           +KF V + +KL K+ E    A  I   ++ I N     +K+  L K   K ++ N+  F 
Sbjct: 518 SKFYVDLLEKLEKFDEALEFASAISKGKVSIYNK----NKILELSKKTAKSKVWNLDDFF 573

Query: 208 TPNSQTLYDFVKKEDLPSDYGGTRKSMVEFNKDAMELLESRNCYYDLDNAKSALELFVSI 267
           T     +   V     P D G     M E     +E ++S  C Y L ++K+ + L  ++
Sbjct: 574 TIEIPHMMAVV-----PHDDGINLSFMCESKVFDLESVDSVTCNYVLSSSKNPMNLLFTL 628

Query: 268 RN 269
            N
Sbjct: 629 HN 630


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 378 PMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGG 437
           P  L +  V   P +   ++S+ K  L   V  K+ F T N   L  Y++ D++ K+ GG
Sbjct: 266 PECLGECIVHKAPWLFQGVWSIIKSWLDPVVVSKVKF-TRNYRDLQQYINPDNILKEFGG 324


>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 383 QIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDSL 442
           Q+ V++  +I   +Y  +K    + V  ++     + N +FD +  DDL   L  +   L
Sbjct: 22  QVSVVDVTMINISLYKSYKSYPTNKVLSELAALFESCNLIFDLIWFDDLQNILNQVTYEL 81

Query: 443 DIYTKKMKEMMLTKRYV--SLTDMKLDKAMFDHRFSRVVDMK 482
           D   K   ++   +  V    +D K+     D +  R  + K
Sbjct: 82  DDKIKSKLQVAHEREAVFSKQSDRKISNNKADKKTGRKNEKK 123


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 384 IHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDSLD 443
           I  +  P      YSL KP       +    +T N   + DY HKD   + L  +RD   
Sbjct: 79  ISQLKVPDYSTNTYSL-KPKKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLRDDTG 137

Query: 444 IYTKKMKEMMLTKRYVSLTDMKLDKAMFDHRFSRVVDMKKNPDCNYE 490
           I     K++M + R+      ++D A      S+ + +  N   + E
Sbjct: 138 I-----KKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIE 179


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 200 ITNMIHFHTPNSQTLYDFVKKEDLPSDYGGTRKSMVEFNKDAMELL---ESRNCYYDLDN 256
           ITN+  F T + + L ++ KK++L +    + +  ++  K+ + +L   +  +   D DN
Sbjct: 278 ITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQEMDKEHARIDFDN 337

Query: 257 AKSALE 262
             S L+
Sbjct: 338 VDSRLD 343


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 47  KSKVTLELFCGIRSSSPELFTNRDPSSPPM--KKALQILNLAHYEIPGRRFVWIWQLNDP 104
           K+    E   G + SSP+ FTN +P++ P+  + A   + +  Y I   R V IW     
Sbjct: 383 KAHAVTETLTG-KPSSPDSFTNANPTTAPIVSRNAQDNMGMLAYMI---RMVSIWGRVVR 438

Query: 105 SLENYDYVQ 113
            L++Y   Q
Sbjct: 439 CLKSYSQKQ 447


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 239 KDAMELLESRNCYYDLDNAKSALELFVSIRNETPE 273
           KDA  L+   NC  +L     A+E+F ++ + T E
Sbjct: 699 KDATTLINIGNCLAELKQFSRAIEVFETVYSSTGE 733


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 185 VDKLYALLKPFMKQEITNMIHFHTPNSQTLYD 216
           + +LY +L P+   E T++ H H P SQ L++
Sbjct: 166 LSRLYTILFPYAGSEHTHIGHSHNP-SQLLFE 196


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 242 MELLESRNCYYDLDNAKSALELFVSIRNETPELFTNRDPLSPS--IQETMKIVKMAVYET 299
           +ELL+    YYDLD   +   LF  +++E P L +N    + S  +Q   K   + +   
Sbjct: 195 IELLDGNPPYYDLDPTSA---LFRMVKDEHPPLPSNISSAAKSFLMQCFQKDPNLRIKTR 251

Query: 300 TDKKHIWI 307
              KH W+
Sbjct: 252 KLLKHPWV 259


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,987
Number of Sequences: 5004
Number of extensions: 111638
Number of successful extensions: 280
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 15
length of query: 520
length of database: 2,362,478
effective HSP length: 76
effective length of query: 444
effective length of database: 1,982,174
effective search space: 880085256
effective search space used: 880085256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)