Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001461-TA|BGIBMGA001461-PA|IPR001071|Cellular
retinaldehyde binding/alpha-tocopherol transport, IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014) 31 1.7
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 30 3.9
SB_26865| Best HMM Match : efhand (HMM E-Value=7.5e-08) 30 3.9
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.9
SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089) 29 6.9
SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_27766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.26) 29 9.1
>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
Length = 351
Score = 31.5 bits (68), Expect = 1.7
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 375 GAMPMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKD 434
G+ ++KQ T L+ D +P K VKEK + +FD K+D PKD
Sbjct: 99 GSKKRKVKQSSKKKTLLVNDSSSDEDEPPPKPLVKEKSKKPRAKNKEVFDLWGKEDTPKD 158
Query: 435 LGGIRDSLDIYTK-KMKEMMLTKRYVSLTDMK 465
+ L + K K+KE++L + + K
Sbjct: 159 VN--EHYLKVTGKMKVKELLLNANEIEVKKQK 188
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 30.3 bits (65), Expect = 3.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 394 DKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDD 430
D+ Y LF L+ KE+ HF +S T+FD + +DD
Sbjct: 1443 DEFYLLFCILIAVKDKEEKHFIHRHSRTVFDLLDEDD 1479
>SB_26865| Best HMM Match : efhand (HMM E-Value=7.5e-08)
Length = 151
Score = 30.3 bits (65), Expect = 3.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 394 DKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDD 430
D+ Y LF L+ KE+ HF +S T+FD + +DD
Sbjct: 60 DEFYLLFCILIAVKDKEEKHFIHRHSRTVFDLLDEDD 96
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 144 DISLKFITKFNVSVAKKLSKYQEDAMPIRLKQ-IHIVNAPP--FVDKLYALLKPFMKQEI 200
D L N + K+L+KYQEDA+ L Q ++ PP VD + P + E
Sbjct: 1973 DKPLSISEDVNTTAFKRLNKYQEDAIKEALTQPFTLIQGPPENCVDTDFTTGIPEVYIEE 2032
Query: 201 TNMIHFHTPNSQ 212
++IH T + +
Sbjct: 2033 LSVIHLFTRHGE 2044
>SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 663
Score = 29.5 bits (63), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 218 VKKEDLPSDYGGTRKSMVEFNKDAMELLESRN-CYYDLDNAKSALEL 263
V +++L D G T EF D +S N C +++ NA SA+EL
Sbjct: 102 VGEKELIKDQGATAGQPQEFTLDVYVEQKSDNPCLFEVSNAMSAMEL 148
>SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089)
Length = 723
Score = 29.5 bits (63), Expect = 6.9
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 203 MIHFHTPNSQTLYDFVKKEDLPSDYGGTRKSMVEFNKDAMELLESRNCYYDLDNAKSALE 262
+I H NSQ L + KK D G + ++ F ELL ++ +L
Sbjct: 386 IITCHDLNSQALNEEQKKFQSLCD--GVQNTVALFQTSMTELLALKD---ELIKHSLPPS 440
Query: 263 LFVSIRNETPELFTNRDPLSPSIQETMKIVKM 294
L V I T +LF LS I E +++VK+
Sbjct: 441 LLVKITLVTSQLFRGASDLSVPINELVRLVKL 472
>SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 29.5 bits (63), Expect = 6.9
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 14/165 (8%)
Query: 46 DKSKVTLELFCGIRSSSPELFTNRDPSSPPMK-KALQILNL---AHYEIPGRRFVWIWQL 101
D+ KV L L GI++ FT +S P+K K +++ +L + E+ + +
Sbjct: 274 DRKKVALVLTDGIQTKDRGPFTPPGIASGPLKMKGVEVYSLGVGSDIEVLELITMASSDI 333
Query: 102 NDPSLENYDYVQDAKVFMLTTDSWLLSDKKLEEDDMVIMDVKDISLKF--ITKFNVSVAK 159
N S N+D + + KV +T D++++ I D D++L+F I KF +A
Sbjct: 334 NVYSARNFDEL-ETKVADITQAQCKACDQRVDV-VFGIPDSSDLALEFDNIKKFYTRLAG 391
Query: 160 KLSKYQEDAMPIRLKQIHIVNAPPFVDKLYALLKPFMKQEITNMI 204
L+ + RL + IV D + L + + + + N I
Sbjct: 392 LLT------ISNRLAHVGIVRYSDTADMILPLDESYYRDSVVNKI 430
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 29.5 bits (63), Expect = 6.9
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 43 YDLDKSKVTLELFCGIRSSSPELFTNRDPSSPPMKKALQILNLAHYEIPGR 93
Y +DK K++ F G +++SP F ++ PS+ +K + +++L +PGR
Sbjct: 4085 YGMDKLKISYIGF-GDKTTSPISFKDKFPSAEDLKSRIDVISL----VPGR 4130
>SB_27766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.26)
Length = 348
Score = 29.1 bits (62), Expect = 9.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 406 SDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDS 441
S++ E I+ HTPN N L Y+ D P D I ++
Sbjct: 80 SNLNEGINLHTPNQNLL--YIQCDTQPSDKNNIGET 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.137 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,906,769
Number of Sequences: 59808
Number of extensions: 704771
Number of successful extensions: 1469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1465
Number of HSP's gapped (non-prelim): 12
length of query: 520
length of database: 16,821,457
effective HSP length: 85
effective length of query: 435
effective length of database: 11,737,777
effective search space: 5105932995
effective search space used: 5105932995
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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