GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001461-TA|BGIBMGA001461-PA|IPR001071|Cellular
retinaldehyde binding/alpha-tocopherol transport, IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (520 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    27   1.6  
AY146760-1|AAO12075.1|  313|Anopheles gambiae odorant-binding pr...    25   3.7  
AF393487-1|AAL60412.1|  304|Anopheles gambiae odorant binding pr...    25   3.7  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 207 HTPNSQTLYDFVKKEDLPSDYGGTRKSM 234
           +TP S T+ D+ +K +  S  GG R+S+
Sbjct: 223 NTPTSTTMRDYSRKNENCSSSGGQRESL 250



 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 415 HTPNSNTLFDYVHKDDLPKDLGGIRDSL 442
           +TP S T+ DY  K++     GG R+SL
Sbjct: 223 NTPTSTTMRDYSRKNENCSSSGGQRESL 250


>AY146760-1|AAO12075.1|  313|Anopheles gambiae odorant-binding
           protein AgamOBP31 protein.
          Length = 313

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 391 LIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDSLDIYTKKMK 450
           L V  I + F+P+L     EK       S  L   VH  +LP +     ++   Y ++  
Sbjct: 85  LQVPAIMNYFQPVLGDRQYEK-----RTSECLERNVHTAELPNNCCQAYETFQCYFREFG 139

Query: 451 EMMLTKRYVSLTDMKLDKAMFD 472
            ++   +YV  T ++  +A  D
Sbjct: 140 NLVTCPQYVPATKLQATQAALD 161


>AF393487-1|AAL60412.1|  304|Anopheles gambiae odorant binding
           protein 1 protein.
          Length = 304

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 391 LIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDSLDIYTKKMK 450
           L V +I + F+P+L     EK       S  L   VH  +LP +     ++   Y ++  
Sbjct: 85  LQVPEIMNYFQPVLGDRQYEK-----RTSECLERNVHTAELPNNCCQAYETFQCYFREFG 139

Query: 451 EMMLTKRYVSLTDMKLDKAMFD 472
            ++   +YV  T +   +A  D
Sbjct: 140 NLVTCPQYVPATKLHATQAALD 161


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,125
Number of Sequences: 2123
Number of extensions: 21188
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 4
length of query: 520
length of database: 516,269
effective HSP length: 67
effective length of query: 453
effective length of database: 374,028
effective search space: 169434684
effective search space used: 169434684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)