GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001461-TA|BGIBMGA001461-PA|IPR001071|Cellular
retinaldehyde binding/alpha-tocopherol transport, IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (520 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   6.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 445 YTKKMKEMMLTKRYVSLTDMKLDKAMFDHRFSRVVDMKKNPDCNYEDYEVIIKVVLRCRI 504
           + +K +  +L K + +  D KL+K + +++    +      D    D  V  K++   R 
Sbjct: 411 FRQKQRAEILAKEHKAAADQKLEKHLIEYKKMLKIKRLFGKDRKIMDM-VREKIIEEKRK 469

Query: 505 GKNRMYEKSVERSVK 519
            KN+    +V   VK
Sbjct: 470 NKNKNLTPAVNIIVK 484


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 199 EITNMIHFHTPNSQTLYDFVKKEDLPSDYGGTRKSMVEFNKDAMELLESRNCYYD 253
           E  N ++  TP+S+  +    ++ L S   G   +++  + +++  LES+   YD
Sbjct: 85  EYNNHLYGSTPDSRDYFSRPFEKRLHSRLPGRNFNLLRADANSVNELESQGFNYD 139


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,146
Number of Sequences: 429
Number of extensions: 6674
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 520
length of database: 140,377
effective HSP length: 61
effective length of query: 459
effective length of database: 114,208
effective search space: 52421472
effective search space used: 52421472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)