GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001460-TA|BGIBMGA001460-PA|IPR002112|Transcription
factor Jun, IPR004827|Basic-leucine zipper (bZIP) transcription
factor, IPR008917|Eukaryotic transcription factor, DNA-binding,
IPR011616|bZIP transcription factor, bZIP_1
         (356 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    23   3.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   3.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   3.4  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   7.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   7.8  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 42 ANLLSQSKLNDLKESRNEYE 61
          A  L + KLNDL++ R  YE
Sbjct: 67 AETLKRYKLNDLEKRREVYE 86


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 42  ANLLSQSKLNDLKESRNEYE 61
           A  L + KLNDL++ R  YE
Sbjct: 227 AETLKRYKLNDLEKRREVYE 246


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 42  ANLLSQSKLNDLKESRNEYE 61
           A  L + KLNDL++ R  YE
Sbjct: 227 AETLKRYKLNDLEKRREVYE 246


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 27  NAADLKNASNIKLAAANLLSQSKLNDLKESRNEYEYEHNN 66
           N  D KN  +  L A     Q+K     +  N  +Y++NN
Sbjct: 114 NKLDKKNDDSPALRALLTRPQAKKTPPNQYENFQQYDNNN 153


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 223  DHDYQVVKSLDTHKVLPNGYVDLPIDED 250
            +H   V  S+    V  NG+V+   +ED
Sbjct: 1505 NHRNSVASSIPAKDVFENGHVNKAFEED 1532


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 223  DHDYQVVKSLDTHKVLPNGYVDLPIDED 250
            +H   V  S+    V  NG+V+   +ED
Sbjct: 1505 NHRNSVASSIPAKDVFENGHVNKAFEED 1532


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 223  DHDYQVVKSLDTHKVLPNGYVDLPIDED 250
            +H   V  S+    V  NG+V+   +ED
Sbjct: 1505 NHRNSVASSIPAKDVFENGHVNKAFEED 1532


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 223  DHDYQVVKSLDTHKVLPNGYVDLPIDED 250
            +H   V  S+    V  NG+V+   +ED
Sbjct: 1505 NHRNSVASSIPAKDVFENGHVNKAFEED 1532


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 27  NAADLKNASNIKLAAANLLSQSKLNDLKESRNEYEYEHNN 66
           N  D KN  +  L A     Q+K     +  N  +Y++NN
Sbjct: 114 NKLDKKNDDSPALRALLTRPQAKKTPPNQYENFQQYDNNN 153


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.133    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,587
Number of Sequences: 317
Number of extensions: 2826
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 356
length of database: 114,650
effective HSP length: 58
effective length of query: 298
effective length of database: 96,264
effective search space: 28686672
effective search space used: 28686672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)