GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001460-TA|BGIBMGA001460-PA|IPR002112|Transcription
factor Jun, IPR004827|Basic-leucine zipper (bZIP) transcription
factor, IPR008917|Eukaryotic transcription factor, DNA-binding,
IPR011616|bZIP transcription factor, bZIP_1
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17789| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.050
SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)               32   0.62 
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)             32   0.82 
SB_3785| Best HMM Match : RuvA_N (HMM E-Value=1.6)                     32   0.82 
SB_26456| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.00011)           30   2.5  
SB_31222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   29   7.6  

>SB_17789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 32/87 (36%), Positives = 43/87 (49%)

Query: 87  VSDGRNGYPRLVLTAEERRLLAKEGITLPTSYPLTKHXXXXXXXXXXXXXXXXSAQDSRK 146
           V++ +  Y  + LT  ER     EGI LP    LTK                 SAQ+SR+
Sbjct: 122 VNEQQGRYKNVELTPLERDTFMAEGIPLPNGGHLTKTQERALKRIRRKIKNKLSAQESRR 181

Query: 147 RKKEYVDGLEDRVKQCTAENQTLIRRI 173
           +KKEYV+ LE R++    EN TL  R+
Sbjct: 182 KKKEYVETLEKRLESFILENNTLRDRV 208


>SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 35.9 bits (79), Expect = 0.050
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 140 SAQDSRKRKKEYVDGLEDRVKQCTAENQTLIRRIK 174
           +A++ R++KKEYV  LE+RV     +N+TLI  +K
Sbjct: 252 AAKECRRKKKEYVKCLENRVAVLENQNKTLIEELK 286


>SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 834

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 99  LTAEERRLLAKEGITLPTSYPLTK 122
           LT EERR L  EG+ +P+  PLTK
Sbjct: 628 LTDEERRTLISEGLPVPSGLPLTK 651


>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
          Length = 471

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 51  NDLKESRNEYEYEHNNNCXXXXXXXXXXXXXHKETQVSDGRNGYPRLVLTAEE 103
           ND++E R ++E + N++C              K  +V  G+    RLV   E+
Sbjct: 368 NDMEEKRLQFEQDENSDCASDETGNENATTELKNDEVKKGKKEKKRLVKVPED 420


>SB_3785| Best HMM Match : RuvA_N (HMM E-Value=1.6)
          Length = 191

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 238 LPNGYVDLPIDEDWPPNLKKRMKKLEFDYEDGRDYLTPVVKEENYGSYKIEA 289
           +P+  +++PI ED      +  K ++F+  D RD +  +V+  NY +YK+ A
Sbjct: 15  IPDISINIPISEDKVKKEGETTKGVKFEVPDARD-VNKLVQATNYFTYKVVA 65


>SB_26456| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.00011)
          Length = 343

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 6   RSILLPVTIKDMKDLKSIKIINAADLKNASNIKLAAANLLSQSKLNDLKESRNEYEYEH 64
           R++L P  +K+++ +KS + IN  ++K A  +K+AA +L        L  ++ E E EH
Sbjct: 101 RALLTPQPLKELR-IKS-QYINHKEIKGAQGVKIAAKDLEKALAGIPLLVAQREDEVEH 157


>SB_31222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 140 SAQDSRKRKKEYVDGLEDRVKQCTAENQTL 169
           +A+++R +KK+Y++ LE  V+    ENQ L
Sbjct: 189 AARENRAKKKKYMEDLEKTVQDLKKENQEL 218


>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 228 VVKSLDTHKVLPNGYVDLPIDEDW 251
           V   LD+  V+   + +LPIDEDW
Sbjct: 700 VSSRLDSSSVITEDFYELPIDEDW 723


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 267 EDGRDYLTPVVKEENYGSYKIEAKIKPDLTEDFLTNTLLSTGRKLGELFDIMPPIP 322
           ED RDYL  V+KE  Y +YK   K+   L       + L T RKL  L DI   IP
Sbjct: 26  EDDRDYLHYVMKE--YQTYKSVEKLVSAL------RSCLDTPRKLDLLADIRNLIP 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.133    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,621,497
Number of Sequences: 59808
Number of extensions: 424844
Number of successful extensions: 719
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 9
length of query: 356
length of database: 16,821,457
effective HSP length: 83
effective length of query: 273
effective length of database: 11,857,393
effective search space: 3237068289
effective search space used: 3237068289
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)